PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00036.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 210aa MW: 23297.2 Da PI: 8.0024 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.2e-14 | 23 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 rg W++eEde+l ++ +G tW+++a+ ++R++k+c++rw +yl Zmw_sc00036.1.g00090.1.am.mk 23 RGLWSPEEDERLFTQITCHGVSTWSSVAQLAViilhsgLRRSGKSCRLRWMNYL 76 788*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.108 | 18 | 80 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-8 | 22 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.15E-20 | 22 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-11 | 23 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 24 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-6 | 26 | 76 | No hit | No description |
PROSITE profile | PS51294 | 9.43 | 81 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 0.14 | 81 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00488 | 84 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-11 | 84 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MARKPNQHAA AGTGAAAEKK ERRGLWSPEE DERLFTQITC HGVSTWSSVA QLAVIILHSG 60 LRRSGKSCRL RWMNYLRPDL RKEPISEREE ETIISLQKSL GNRWGRTDKA IKNHWNSRIR 120 KRLNAAANAG QCRAGYSTAE GQAPAAGEKE EHTNNAAKAA APSPIPVYAC QLLDGGAQAF 180 HELDYVDDLL IDVPGHMEAW ESELFSLDIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-19 | 23 | 123 | 27 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968332.1 | 2e-74 | transcription factor MYB57 | ||||
Swissprot | P20027 | 8e-36 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A2T7DRN8 | 7e-76 | A0A2T7DRN8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24104.1.p | 8e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 |