PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00034.1.g00550.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 489aa MW: 53620.9 Da PI: 10.1914

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00034.1.g00550.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	88	9.2e-28	312	367	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY eC++NhAas+Gg+++DGC+Ef+++ geegt +lkCaACgCHR+FHRr ++ Zmw_sc00034.1.g00550.1.am.mk 312 CSVRYGECRRNHAASTGGYSIDGCREFIAE-GEEGTGGGLKCAACGCHRSFHRRVQV 367 789************************8.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	2.0E-17	304	369	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.8E-27	314	366	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.7E-20	315	364	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.255	316	365	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MEQIKTSGGR VSGSCVRKLM ARRREKSASG GGGDIREQHH VGEPRRRLGA LLLASNAGGL 60 YRERNQLQEA EATLESSTTL GSRAVASAPF CLHPTRAGST GMQLVELTQV GGRHEECDEV 120 DAQHALAAFF FYLPAGSPLF FFLDHQLPPS TLLSLSPPLS PEGAVPCGGE GEELLQWWRW 180 LGTSRRQGSG VGDNALCAAA VPEVARRSYC GAGVVGCRHS TAVSSGRRRA EKGGKVGARA 240 RHGDDDGGVR PVRGEKASRR AGQASPVSFS GLRRRRRRRR RFVSPGRPFP EARPTLHFTW 300 RWCEPIVRFT CCSVRYGECR RNHAASTGGY SIDGCREFIA EGEEGTGGGL KCAACGCHRS 360 FHRRVQVFEA LELDPRKQFV TSRVPCTRLD PQYMCRRSVI QRILFTLESR ITCDGAPGLG 420 ERTTRAEISS RRRAILPGEL NELQCTTARA PELTLVSEQQ LWELMARTGN GSGLVLNAAA 480 SWWIRWKVV

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MEQIKTSGGR VSGSCVRKLM ARRREKSASG GGGDIREQHH VGEPRRRLGA LLLASNAGGL  60
YRERNQLQEA EATLESSTTL GSRAVASAPF CLHPTRAGST GMQLVELTQV GGRHEECDEV  120
DAQHALAAFF FYLPAGSPLF FFLDHQLPPS TLLSLSPPLS PEGAVPCGGE GEELLQWWRW  180
LGTSRRQGSG VGDNALCAAA VPEVARRSYC GAGVVGCRHS TAVSSGRRRA EKGGKVGARA  240
RHGDDDGGVR PVRGEKASRR AGQASPVSFS GLRRRRRRRR RFVSPGRPFP EARPTLHFTW  300
RWCEPIVRFT CCSVRYGECR RNHAASTGGY SIDGCREFIA EGEEGTGGGL KCAACGCHRS  360
FHRRVQVFEA LELDPRKQFV TSRVPCTRLD PQYMCRRSVI QRILFTLESR ITCDGAPGLG  420
ERTTRAEISS RRRAILPGEL NELQCTTARA PELTLVSEQQ LWELMARTGN GSGLVLNAAA  480
SWWIRWKVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	280	RRRRRRRRR
2	273	280	RRRRRRRR
3	274	280	RRRRRRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120