PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00026.1.g00620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 144aa MW: 16118.5 Da PI: 10.5419 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 41.5 | 4.3e-13 | 86 | 122 | 3 | 40 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylh 40 ++YVNaKQ+++Il+RR +Rak+++e+++ + +rk h Zmw_sc00026.1.g00620.1.sm.mk 86 AIYVNAKQFKGILRRRLARAKAARERRV-SMKRKVTNH 122 69**************************.666665555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 0.0021 | 82 | 137 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 13.282 | 83 | 118 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-12 | 86 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MAFWVRSGVS YLGKQLAFHE PSAPTSFAYP AWQQDYSGCF DLALGQSMAC NVDQRHDYGV 60 CSTYGAHVVG RRKVLLQPAI TVEEPAIYVN AKQFKGILRR RLARAKAARE RRVSMKRKVT 120 NHAAESFSSR SSWSIPALLL PLTN |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645550.1 | 6e-30 | nuclear transcription factor Y subunit A-2 | ||||
TrEMBL | A0A0A9ILA9 | 2e-43 | A0A0A9ILA9_ARUDO; Uncharacterized protein | ||||
STRING | OPUNC07G03530.1 | 5e-32 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP47196 | 3 | 3 |