PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00018.1.g00710.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 295aa MW: 32345.4 Da PI: 5.1144

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00018.1.g00710.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	230	262	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++e++ +LA+ +gL+++q+ +WF N+R ++ Zmw_sc00018.1.g00710.1.sm.mk 230 PYPTEEDKVRLASMTGLDTKQINNWFINQRKRH 262 8*****************************885 PP
2	ELK	33.2	1.1e-11	182	203	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Zmw_sc00018.1.g00710.1.sm.mk 182 ELKEMLLKKYSGCLSRLRSEFL 203 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	2.3E-22	36	80	IPR005540	KNOX1
Pfam	PF03790	2.1E-21	38	78	IPR005540	KNOX1
SMART	SM01256	1.8E-26	86	137	IPR005541	KNOX2
Pfam	PF03791	3.4E-23	90	136	IPR005541	KNOX2
Pfam	PF03789	1.3E-8	182	203	IPR005539	ELK domain
PROSITE profile	PS51213	10.423	182	202	IPR005539	ELK domain
SMART	SM01188	3.6E-6	182	203	IPR005539	ELK domain
PROSITE profile	PS50071	12.341	202	265	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-19	204	273	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-13	204	269	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-27	207	267	IPR009057	Homeodomain-like
CDD	cd00086	1.87E-12	214	266	No hit	No description
Pfam	PF05920	3.9E-17	222	261	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	240	263	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MEDLYSIHPG IPRVGAAASE ASNVGVGGPS PADLTELMKA QIASHPLYPS LLSAYIECRK 60 VGAPPEVASL LEEVSRERRA VGGFGGAGEI GVDPELDEFM DTYCRVLVRY KEELSRPLDE 120 AASFLSSIQA QLSNLCSGGS SPAATATPSD EMIGSSEDDQ CSGDTDVADV GQEHSSRLAD 180 HELKEMLLKK YSGCLSRLRS EFLKKRKKGK LPKDARLVLL DWWNTHYRWP YPTEEDKVRL 240 ASMTGLDTKQ INNWFINQRK RHWKPSEDMR FALMEGVAGS SSGTTLYFDA GTIGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	206	LRSEFLKKRK
2	203	207	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00670	PBM	Transfer from GRMZM2G087741	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455513.1	0.0	homeobox protein knotted-1-like 1
Swissprot	Q9FP29	1e-161	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	C5XI60	0.0	C5XI60_SORBI; Uncharacterized protein
STRING	Sb03g012480.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]