PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00018.1.g00590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 361aa    MW: 39600 Da    PI: 11.005
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00018.1.g00590.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-18155202148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  Zmw_sc00018.1.g00590.1.am.mk 155 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 202
                                   79******************************99************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23146205IPR009057Homeodomain-like
PROSITE profilePS5129422.842150206IPR017930Myb domain
SMARTSM007171.0E-13154204IPR001005SANT/Myb domain
PfamPF002492.7E-16155202IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-21156229IPR009057Homeodomain-like
CDDcd001672.32E-12157202No hitNo description
PROSITE profilePS500904.484203282IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-7206229IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGRDTYEVED PEASRLTTTS LAPPVAAAIV VAQLLAPLPR LRRSGRVFMQ PENGDYPFAP  60
THPHRSVPNN ATVVFSPQNC AVCIFTQEPD QTSSSSQLSV PLNLCRAQAH KKPQLFAVGS  120
GDPSSSSLNL SSSPFSLKQR GMGRAPCCEK VGLKKGRWTK EEDEILARYI KEHGEGSWRS  180
LPKNAGLLRC GKSCRLRWIN YLRADLKRGN ISEEEDEMIM KLHATLGNRP SSTVVHCHSA  240
HERSPTQAFP SSLSSLVALH QARWPRAQRT WKRNSRRARG SCPVHTRRPS AFLLTASLVA  300
RCSVTAPAGR PAGSERDENE MATRTAPSAS GVTPLGSRAL KRDAGRGPGR DPMARPKSFR  360
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-13153229580B-MYB
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448