PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00018.1.g00590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 361aa MW: 39600 Da PI: 11.005 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.2 | 3.9e-18 | 155 | 202 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl Zmw_sc00018.1.g00590.1.am.mk 155 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 202 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 146 | 205 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.842 | 150 | 206 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 154 | 204 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 155 | 202 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-21 | 156 | 229 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-12 | 157 | 202 | No hit | No description |
PROSITE profile | PS50090 | 4.484 | 203 | 282 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 206 | 229 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRDTYEVED PEASRLTTTS LAPPVAAAIV VAQLLAPLPR LRRSGRVFMQ PENGDYPFAP 60 THPHRSVPNN ATVVFSPQNC AVCIFTQEPD QTSSSSQLSV PLNLCRAQAH KKPQLFAVGS 120 GDPSSSSLNL SSSPFSLKQR GMGRAPCCEK VGLKKGRWTK EEDEILARYI KEHGEGSWRS 180 LPKNAGLLRC GKSCRLRWIN YLRADLKRGN ISEEEDEMIM KLHATLGNRP SSTVVHCHSA 240 HERSPTQAFP SSLSSLVALH QARWPRAQRT WKRNSRRARG SCPVHTRRPS AFLLTASLVA 300 RCSVTAPAGR PAGSERDENE MATRTAPSAS GVTPLGSRAL KRDAGRGPGR DPMARPKSFR 360 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-13 | 153 | 229 | 5 | 80 | B-MYB |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |