PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00014.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 295aa MW: 31480.1 Da PI: 7.2299 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.6 | 7.7e-42 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvh++FGasnv+kll++lp+ +reda++sl+yeA+ar+rdPvyG+v+ i+ Zmw_sc00014.1.g00210.1.sm.mk 6 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFANVHRVFGASNVSKLLHDLPHAQREDAVNSLAYEADARLRDPVYGCVSYIS 86 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 lq +++q++ ela++++e Zmw_sc00014.1.g00210.1.sm.mk 87 VLQLRIRQARDELAAARKE 105 **************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.304 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-41 | 6 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSSSSPCAAC KLLRRKCTQG CVFAPYFPPD NPAKFANVHR VFGASNVSKL LHDLPHAQRE 60 DAVNSLAYEA DARLRDPVYG CVSYISVLQL RIRQARDELA AARKELAAYI GPAAYAPFAP 120 VPPQYHHHHH AAAAQNAAGM PLAAAGIGLV VESQNAHGHA QQQQIMAQQH QHLHHHQQLA 180 EAHAQQLAAA VEVARDQDLM TRQAAAYPHA VPGSNASPTV AVVPPDASRY EGGFLFQHQQ 240 QPPSHSQAQT AVALTYQMER SPPPSSSGQS PPAEVSHQQH AEGSDEGGGG VVPPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-47 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-47 | 3 | 109 | 8 | 114 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012704292.1 | 1e-116 | LOB domain-containing protein 6 | ||||
TrEMBL | A0A1E5VYJ4 | 1e-119 | A0A1E5VYJ4_9POAL; LOB domain-containing protein 36 | ||||
STRING | Si036905m | 1e-116 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 |