PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00005.1.g00620.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 420aa    MW: 45697.5 Da    PI: 5.3109
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00005.1.g00620.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.8e-12378410131
                          GATA   1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 
                                   C++Cgt +Tp+WR   gp+g  tLC aCG+ y 
  Zmw_sc00005.1.g00620.1.am.mk 378 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 410
                                   *************77799************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0047105149IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-5105156No hitNo description
SMARTSM004010.13217262IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-5372420IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.183372409IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-9373411IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.47E-9374414No hitNo description
CDDcd002029.60E-7377409No hitNo description
PfamPF003204.6E-9378409IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVPGDLPDDE SPAALAEQLF GSGDDPMAFI DDTALEVVAA TGKDGKEEEE LKGLSNKDVF  60
PTLNTKALPE APATAPRTQR KGVRPSQGAA SSLPPALRPG TGAPAKAGRQ CRHCGTEGSY  120
TLCNVCGIQY KRGALLPEYR PLNIPTFSPD LHSNHHQRVI DMARSREEEK KESFLSDADL  180
EAIINDPALQ ALDASGMDEH RDWVLKNAFQ PGTLAPTKAG QPCRHCGTYE TPLWHICTGP  240
EGRFALWGIQ YCNVTLLPEY PPLKTPTSSA LHSDWRQCVI DTARFLEAEW SRSGIGLEAF  300
LRDMVWDMLA ASGHYNKEEL ESLSKAASTL DTKSLPEAAA TAQLPQTMGV RWSREAASSP  360
LPALQPGNLA LAKAGQQCRH CGTYETPQWR ICTGPEGRFT LCDACGIQYS NVTVLPEYRP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2818535