PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00004.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 222aa MW: 23097.2 Da PI: 6.2327 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.4 | 1.3e-29 | 2 | 105 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l a+p ++r+++++sl+yeA+ r+ +Pv+ Zmw_sc00004.1.g00230.1.sm.mkhc 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLGAVPLQHRPALFRSLLYEACGRTINPVS 80 6*********************9999888899*********************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 Ga+g++++++++l+q++ae++l++e Zmw_sc00004.1.g00230.1.sm.mkhc 81 GAIGLMWTGNWDLCQAAAEAVLRGE 105 *******************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.899 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-23 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLGAVPLQHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAAEA VLRGESLRAL SAIPAAFTDR 120 DMAGLYGNVD VAASSSPEHS SSTPSRKRKN CGRFLAGTDD CQPPAGLLLQ PCELHLCLTP 180 ASLPAGGRPG CGTSNEDSGT TTCEEASGDV EAGVPTLLNL FS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177395.1 | 1e-109 | LOB domain-containing protein 39-like | ||||
TrEMBL | A0A3B6JFF0 | 1e-107 | A0A3B6JFF0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453HER9 | 1e-107 | A0A453HER9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_9575221BB.3 | 1e-108 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8450 | 30 | 41 |