PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma9g01150.1
Common NameZOSMA_9G01150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 326aa    MW: 36743.3 Da    PI: 8.3552
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma9g01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.6e-31225280156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+++LH+rFv+a++q+GGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Zosma9g01150.1 225 KARRCWSSDLHRRFVSALHQIGGSQAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 280
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.561222282IPR017930Myb domain
SuperFamilySSF466896.09E-16223283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28223284IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25225280IPR006447Myb domain, plants
PfamPF002497.8E-6227278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTYYVHNLDG FLHDHHRIGS VTASGDVEVC WVSATDGEIE DGRDFSGHTV ANYVMALEEE  60
KRKIEPFKRE LSLCLQLVTD LINHLKRDLV NVTPVLEHFL PIKSTPVLDQ NGATQNSEKE  120
TRDRNKMDWM SSAQLWSDNY SDEAISNNNH DETNNGFGRV FTATAFQEEE TSKKKKKKKK  180
KKLNTIATSD LSLLTPGGFR FFSPAKNADS VLSDNNQQQQ HARRKARRCW SSDLHRRFVS  240
ALHQIGGSQA ATPKQIRELM KVDGLTNDEV KSHLQKYRLH NRRISSCPPL SIAIDETMVV  300
LGNGGMWVPS SISSPAHTDK HTTFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-13225283260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172181KKKKKKKKKK
2173181KKKKKKKKK
3175181KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792589.14e-61myb family transcription factor EFM
TrEMBLA0A0K9NJ490.0A0A0K9NJ49_ZOSMR; Uncharacterized protein
STRINGXP_008792589.12e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.13e-43G2-like family protein