PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma9g00280.1

Common Name

ZOSMA_9G00280

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

SRS

Protein Properties

Length: 329aa MW: 34479.3 Da PI: 8.6545

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma9g00280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	208.2	2.1e-64	119	273	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel....kskkqsalsstkls 92 +sgta+CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rre q + + +s ++++sk++r +++++++s+t+ s Zosma9g00280.1 119 SSGTATCQDCGNQAKKDCTHRRCRTCCKSRGFDCSTHVKSTWVPAARRRESQIS--GCNINIGSSGSTSTSKKPRLAggnhVTAAATTTSNTSNS 211 57999*******************************************7554..445556666677888888877443334444444445555 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ +++ + ++lP +vs++avf+cv+v+s+ddge e+aYq+ v igGh+fkG+LydqGl++ Zosma9g00280.1 212 NTTISSTHHEEKLPGQVSAPAVFKCVKVTSIDDGEGEYAYQAMVRIGGHIFKGFLYDQGLKD 273 555555566666*********************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-59	122	272	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	124	166	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.3E-29	224	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MSMVGLRDVL FVTPASGGGS GGEQQQSLIP VISTATPYHL DDRNNVTAIH HHLWQQQQQQ 60 QPQQQMALPP PLSSSYSTNP SPNLRKPTVM PLATMLESST LPTGIIGGSG NVLLQSLSSS 120 GTATCQDCGN QAKKDCTHRR CRTCCKSRGF DCSTHVKSTW VPAARRRESQ ISGCNINIGS 180 SGSTSTSKKP RLAGGNHVTA AATTTSNTSN SNTTISSTHH EEKLPGQVSA PAVFKCVKVT 240 SIDDGEGEYA YQAMVRIGGH IFKGFLYDQG LKDRDKPDLP NKNSTMPNLS ELHLGGGGGS 300 AAGGSHGHNS NFLDGGGAAA AFGNHNIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027933203.1	1e-71	protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_027933205.1	1e-71	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q9LQZ5	2e-47	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0K9NIL7	0.0	A0A0K9NIL7_ZOSMR; Lateral root primordium (LRP) protein-related
STRING	GSMUA_AchrUn_randomP13420_001	6e-71	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-52	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Zosma9g00280.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]