PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00640.1
Common NameZOSMA_99G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 607aa    MW: 68374.6 Da    PI: 6.5151
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.4e-10482530348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       WT  E  +l+++v q+G g+W+ I r++    + Rt  ++k++w+++l
  Zosma99g00640.1 482 QWTLTEVMKLIEGVSQHGVGRWTEIKRHFFsssNYRTSVDLKDKWRNLL 530
                      6********************************9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.428475534IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13476531IPR009057Homeodomain-like
SuperFamilySSF466895.53E-16477532IPR009057Homeodomain-like
SMARTSM007171.3E-10479532IPR001005SANT/Myb domain
CDDcd116601.50E-20481531No hitNo description
PfamPF002491.8E-7482530IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MPENIHDKCE IVNDIPDDMY PILDLESGFD LLTYDDIQVE GNVTSRPLFE DTLDFDNLFS  60
DPQIKKSLGE EDCSITPMKE GRSVIKCSNS ADGCYGLFTD DCGLMNSIEA HGGKPEINFE  120
FSDRIFRGIE VDRNMYLTRD VLGSTSNDFL LDDGSSQKGL FLNYVPIKDS SLEKSQSGCG  180
VQNLENDRSL LAETSKFSKP VIPPHSESKS EQNVSFLDNM NIDELHEVFR STFGRDTFID  240
DREWLKRRIM FGLQSTKEMD TSSSITESRS SSNEHDDNSI FCINCDMPPK RLNCGSLSEM  300
NNSEKALPED HGKEGSTDEK TGMISASDFD TVKSLDLGVK DGELTSKKRL RKPTRRYIEE  360
LSEKKPKIFS SQKMESCNKE SKDIMELIQS NCDSPILMGS QLFSASGPRR GRPRKNCTLL  420
LRVTKGNKEL KPRPFHPSRK ASDNFRNFES TLEDDDSMSA ASDSSCKISK TGSGGRRKHH  480
RQWTLTEVMK LIEGVSQHGV GRWTEIKRHF FSSSNYRTSV DLKDKWRNLL RATGAHIHGK  540
KKVESSKKQH MSHPIPQSVS RRVRELSTIY PYPRERKSRS QLMGSGTNST LISTVEMACE  600
SSDHGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408414RRGRPRK
2474481GRRKHHRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NHP60.0A0A0K9NHP6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69663341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.17e-42TRF-like 6