PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma99g00040.1

Common Name

ZOSMA_99G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

SRS

Protein Properties

Length: 292aa MW: 31976.7 Da PI: 8.5422

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma99g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186.1	1.4e-57	86	222	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 g+++CqdC nqakkdC+h+RCRtCCksr+f+C+thv+stW+paakrrer+q + +++++ skr+re ++++++ +++l+s+ Zosma99g00040.1 86 RGGVNCQDCCNQAKKDCVHMRCRTCCKSRNFQCSTHVQSTWIPAAKRRERRQPGHEG------TESREYSKRPREV--TTHTTSGRMELASS-- 169 6789*******************************************97765554......3456789999986..44444444444433.. PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + s +P++v s+avfrcvrv++++d+ee++aYqtavsig hvfkGiLydqGl+ Zosma99g00040.1 170 ----TGSLFPSKVTSAAVFRCVRVNTINDDEEQYAYQTAVSIGKHVFKGILYDQGLA 222 ....3456*********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-55	88	221	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.7E-24	90	132	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-24	174	221	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MTGFSLNQLP HTEDQLSPAN FFLYHGGSGC KDEGELELWH KQMYLQQQPR HHQQLQLYSG 60 RLGLFVDESV GASSTGDMTG RSGGGRGGVN CQDCCNQAKK DCVHMRCRTC CKSRNFQCST 120 HVQSTWIPAA KRRERRQPGH EGTESREYSK RPREVTTHTT SGRMELASST GSLFPSKVTS 180 AAVFRCVRVN TINDDEEQYA YQTAVSIGKH VFKGILYDQG LAAPNSPYSV VGEGRRRQGR 240 CCSPVTIATT TYTSTGSVMA GATEVVTEPS PPTYPTSSFP ARNSFPIKDG S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SD40	4e-50	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0K9NH46	0.0	A0A0K9NH46_ZOSMR; Lateral root primordium (LRP) protein-related
STRING	GSMUA_Achr2P12310_001	3e-54	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	6e-48	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Zosma99g00040.1

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]