PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma98g00410.1 | ||||||||
Common Name | ZOSMA_98G00410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NF-YC | ||||||||
Protein Properties | Length: 160aa MW: 17962.4 Da PI: 6.0361 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 43.9 | 5.1e-14 | 15 | 106 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprd 99 + e+++++ ++P r+k+i+k d +++++++ea l+s + +lf+ l+ r+ + + ++kr+t++ + +av t+t + dfl+d p d Zosma98g00410.1 15 DQEQEEEVLAPSFPSGRVKRIIKLDGEINKLTSEAVHLISLSVDLFLGFLAERAKNVTVQKKRKTINLEYLRSAVsTHTPTSDFLLDCLPGD 106 57899999999************************************************************999835789*******99977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.04E-14 | 22 | 102 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-14 | 26 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.3E-16 | 27 | 104 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MEEVDERRRE EADQDQEQEE EVLAPSFPSG RVKRIIKLDG EINKLTSEAV HLISLSVDLF 60 LGFLAERAKN VTVQKKRKTI NLEYLRSAVS THTPTSDFLL DCLPGDHHVL DRTEKTKKPK 120 TFHEEKPLPR GVQRIDGFFK KTPVAVAATA AVTVDLDAE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020250125.1 | 6e-42 | dr1-associated corepressor homolog | ||||
TrEMBL | A0A0K9NHH6 | 1e-111 | A0A0K9NHH6_ZOSMR; Nuclear factor Y, subunit C13 | ||||
STRING | XP_006403274.1 | 1e-36 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 3e-34 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | Zosma98g00410.1 |