PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma98g00100.1 | ||||||||
Common Name | ZOSMA_98G00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36605.9 Da PI: 6.6477 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.6 | 1.9e-07 | 219 | 257 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk+L Zosma98g00100.1 219 VRKQKLSDRIAALQQLVSPF-----GKTDTASVLFEAIEYIKYL 257 6889***************8.....8*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.411 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.09E-11 | 218 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.08E-7 | 218 | 258 | No hit | No description |
Pfam | PF00010 | 7.7E-5 | 220 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-9 | 222 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MAEHFHPGAL YSTRTTSTST VPTPAPAPVH VHGVTADHFI HDASFGFSSP TFDWNQATTM 60 TLQNDFVQDL SSNPYFCAKA PASYGSALLL PSNPLFEPNL KHGCSSSSES SDDTNQLPSW 120 FKFPQFFDTL SNQLHYFSDQ FSDSTAAYWN PPTVGSEEFI LPPLYNYFPG PNSWVPKPNR 180 IIKIPSVSDE VRSLNNYHPG PAIKKPRIET SSSLPIFKVR KQKLSDRIAA LQQLVSPFGK 240 TDTASVLFEA IEYIKYLHYE VDALSTQYMK NNTHKQDERK RDLLSRGLCL VPIATANIPI 300 STNQSNLDLS SHDLAASYRY TTEQMEK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NJE2 | 0.0 | A0A0K9NJE2_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2970 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 7e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma98g00100.1 |