PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma97g00930.1 | ||||||||
Common Name | ZOSMA_97G00930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 258aa MW: 28238.5 Da PI: 9.8303 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 64 | 113 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR+riNs +++Lr l+P+ + + K++Ka+ L +++ +k+L Zosma97g00930.1 64 KSHCEAERRRRERINSHLSTLRGLVPTtS---KVSKMDKATLLAQVIMQVKEL 113 58*************************66...*************99877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.256 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-11 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-14 | 65 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-13 | 65 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-11 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 2.50E-5 | 152 | 220 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.3E-6 | 152 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MNRSFEIEMS ALQFGDCMVF RGGFGGGGAT GFVGSSSNSS MKATNNAAAG DVLGPEMKAA 60 MAMKSHCEAE RRRRERINSH LSTLRGLVPT TSKVSKMDKA TLLAQVIMQV KELKNNASQI 120 SQKTHLPSDT DEVTVEAFID EMNPREILIK ASICCKDRPE LLSDLKKIIR SLRLKIMSSE 180 IAFLEGRVKN EFVVACEGNT NCPNMEKNKN KLSISLQKAL ESILDRISAQ AEFSPRTLLA 240 GGKRRRSPFE SSPYSLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 74 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NHT7 | 0.0 | A0A0K9NHT7_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11011 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 7e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma97g00930.1 |