PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma97g00260.1

Common Name

ZOSMA_97G00260

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 344aa MW: 37466.9 Da PI: 9.8339

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma97g00260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.2e-39	87	147	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+a +cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Zosma97g00260.1 87 KEQAFSCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRPS 147 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-29	80	145	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.8E-33	89	145	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	91	145	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	93	129	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MNSPSSHISH SQYIYLASTD RSNKCNNRKK EEKKNKTAPT MDTPQWTQEM MLVKPPCSLS 60 MEEMMVSSSS STRPPQQLVE RKTRPQKEQA FSCPRCNSTN TKFCYYNNYS LTQPRYFCKT 120 CRRYWTEGGS LRNVPVGGGS RKNKRPSSSS SSNANTSTSL LTNASAFHSS ISNPNSKKLA 180 IQQIPKFHDL NLGFPNLVGD RLHPFQSLNM NMNMNMNMNM SMNMGGIVNN PSTCANGNVG 240 AVLRRSGGIV NPFVPLPIVQ EHESGAVVYP SGVGGGFDGN NVQDGAGGSS GGGSRLLFPF 300 ENLRQVSSTN PSEHHELDEN TRGQGGDSSA FWNGAMGGGR TAW*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MNSPSSHISH SQYIYLASTD RSNKCNNRKK EEKKNKTAPT MDTPQWTQEM MLVKPPCSLS  60
MEEMMVSSSS STRPPQQLVE RKTRPQKEQA FSCPRCNSTN TKFCYYNNYS LTQPRYFCKT  120
CRRYWTEGGS LRNVPVGGGS RKNKRPSSSS SSNANTSTSL LTNASAFHSS ISNPNSKKLA  180
IQQIPKFHDL NLGFPNLVGD RLHPFQSLNM NMNMNMNMNM SMNMGGIVNN PSTCANGNVG  240
AVLRRSGGIV NPFVPLPIVQ EHESGAVVYP SGVGGGFDGN NVQDGAGGSS GGGSRLLFPF  300
ENLRQVSSTN PSEHHELDEN TRGQGGDSSA FWNGAMGGGR TAW*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252779.1	1e-66	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A0K9NHM9	0.0	A0A0K9NHM9_ZOSMR; Uncharacterized protein
STRING	XP_010252779.1	4e-66	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-40	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma97g00260.1