PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma96g00520.1 | ||||||||
Common Name | ZOSMA_96G00520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HB-other | ||||||||
Protein Properties | Length: 170aa MW: 19842.4 Da PI: 9.4881 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.9e-19 | 43 | 98 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r+ ++++++q++ Le+ F+ + +p+ ++r +L kkl+++ +qV++WFqN+R+k k Zosma96g00520.1 43 KRNYHRHSHDQIQNLEAIFKDCANPNVKQRVDLGKKLNMDSQQVRFWFQNKRTKVK 98 688999************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.31E-17 | 29 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-19 | 38 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.629 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-15 | 42 | 104 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 43 | 98 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.78E-12 | 43 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MMYSGSRLDD FDGQERRLSR EVDTNGNQNS IVQYDPMNSN EKKRNYHRHS HDQIQNLEAI 60 FKDCANPNVK QRVDLGKKLN MDSQQVRFWF QNKRTKVKNQ IKNKEISILR QQIEKLQHEK 120 MLLIMESMSK PCCSQCGYHP ANGKILQKDQ EFPTENDRSS QGCVSHSKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NHX7 | 1e-123 | A0A0K9NHX7_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61150.1 | 3e-33 | homeodomain GLABROUS 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma96g00520.1 |