PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma94g00450.1

Common Name

ZOSMA_94G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 336aa MW: 38019.4 Da PI: 9.6751

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma94g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	7.8e-20	85	177	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+++GFsvr +++++ + +++ ++r++ Cskeg+ + + ++ +rr++a +r+gC a++k+k++ +g+w v+++ l+HnH+l+ Zosma94g00450.1 85 YYGYASKMGFSVRLGSTNYKtskdDGKKNLVMRRLLCSKEGTVDLLHPSKLGKRRKNAISRCGCFASIKIKRKGmSGVWIVKHIILQHNHPLT 177 899********9876655454444567899********99999899*****************99**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-17	85	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-6	299	334	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MPNANYVPHH NHDTPLDNLR SPISSENNDL TGQLNAITSF VNASLSFFVP KQPIDTNPYS 60 DNVKLNSPPT VGQFYSSYSN ALDQYYGYAS KMGFSVRLGS TNYKTSKDDG KKNLVMRRLL 120 CSKEGTVDLL HPSKLGKRRK NAISRCGCFA SIKIKRKGMS GVWIVKHIIL QHNHPLTTPS 180 KVRFLPINRS ISSTSRLLFQ SLSEVNVPVS QQTAYFSSQV GGIEYMRCTQ LDISNMCCDD 240 RVDLKNYEVN LLVEEFELKK SVQPDFFYSI VKDSSDRFKH VFWVDSVMIQ HFKLFGDAVT 300 FDTTYKTNVY SLIFGIFCGV NHHRKTVIFG SAFLR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NID4	0.0	A0A0K9NID4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-40	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma94g00450.1