PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma94g00330.1 | ||||||||
Common Name | ZOSMA_94G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ARF | ||||||||
Protein Properties | Length: 656aa MW: 72601.2 Da PI: 8.2357 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.7 | 2.5e-24 | 119 | 220 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + Zosma94g00330.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfptldhsADPPVQ--TVLARDVHGEQWKFRHIYRGTPRRHLLTTGWSSFVNTKKLMAGDSIVFL--RA 208 89***********************9****986444444..899**********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+++r+ Zosma94g00330.1 209 ENGELRVGIRRA 220 9999******97 PP | |||||||
2 | Auxin_resp | 111.1 | 1.1e-36 | 288 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Prast+eF+vk++ v++a ++++++GmRfkmafetedss++++ +Gt++gv+ +dp+rWp+S Wr L+ Zosma94g00330.1 288 AANLAANGHPFEVVYYPRASTPEFCVKASAVKAANRMHWAPGMRFKMAFETEDSSRISWfMGTIAGVQYSDPIRWPHSLWRILQ 371 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-36 | 115 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.23E-29 | 116 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-21 | 118 | 219 | No hit | No description |
Pfam | PF02362 | 2.5E-22 | 119 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.62 | 119 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-23 | 119 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.4E-32 | 288 | 371 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.543 | 558 | 639 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MKEPDKCLDS QLWHACAGGM VQMPPVNSKV CYFPQGHAEH AQGNVDFGST RRIPSQILSR 60 VTSIKYMADP DTDEVFSKIR LIPITASNKL NNEMDIVEDD DDDDDLGLGV EAPEKLASFA 120 KTLTQSDANN GGGFSVPRYC AETIFPTLDH SADPPVQTVL ARDVHGEQWK FRHIYRGTPR 180 RHLLTTGWSS FVNTKKLMAG DSIVFLRAEN GELRVGIRRA KRGIGVGPDS PSGWNTPSNI 240 YAPHYSTGFS VFLREEENKL VKNNGIHGTG GGLGKGKRRV TTESVIEAAN LAANGHPFEV 300 VYYPRASTPE FCVKASAVKA ANRMHWAPGM RFKMAFETED SSRISWFMGT IAGVQYSDPI 360 RWPHSLWRIL QVSWDEPDLL QNVKRINPWL VEIVSNLKPM HLSSFVPTLQ PRKKLRMNNH 420 PDFSFDGQYP TPVFSVGSPI NNNNLYLPFR SFTKNITAGS TPSSIQGARH AQIGISLSDK 480 LHPRISTNHQ QDNNISCLLT IGNSSPETTK SSSSLSSPTS PSSFLLFGKT ILTEKQMRTV 540 SNGVDVGDNL LAKLSLETGH CKVFMESEDV GRTLDLSSLS SFDEMCSKLA DMFDIKKSDM 600 RADHVHYRDS SGSVKLAGDV PFGDLKKSAR RLMILLDANT TRLVENSNNQ MQMHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-79 | 8 | 392 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 410 | 416 | PRKKLRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010920443.2 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0K9NIQ0 | 0.0 | A0A0K9NIQ0_ZOSMR; Auxin response factor | ||||
STRING | XP_008791554.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Zosma94g00330.1 |
Publications ? help Back to Top | |||
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