PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma93g00770.1

Common Name

ZOSMA_93G00770

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 321aa MW: 34567.5 Da PI: 9.5143

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma93g00770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.6	2.7e-38	80	137	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++ l+cprCds ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+ Zosma93g00770.1 80 DTPLNCPRCDSINTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKR 137 67899***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	59	137	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	81	137	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	83	137	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	85	121	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MVYGSVPGYL DLDPPHSLSW INDHLFSNSP RSGGGDVQRN QLPPRPETGS MHMVIGSIRP 60 ASMVEKERSR LPKLTQQPAD TPLNCPRCDS INTKFCYFNN YSLSQPRHFC KTCRRYWTRG 120 GALRNVPVGG GCRRNKRGKI TTSKSLNNPS NNQQGSNTRA TSSGATLSTT GVGAITSSSS 180 SSASAHMYKS PIMSENGGGG ILQAAIGQMG GAASSYCYSG LEQWRSPLSF ISGLDEIITS 240 APPSTGILYP FDTTTSGTIT QHDLPLKIDE TSQRRLNLPR QYLGITSSIN DDQYSWGGGG 300 SRSLWTDFPG FNPSSTNNLL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NJ35	0.0	A0A0K9NJ35_ZOSMR; Dof zinc finger protein DOF3.6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	4e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma93g00770.1