PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma93g00730.1
Common NameZOSMA_93G00730
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 710aa    MW: 80730.4 Da    PI: 6.8929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma93g00730.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.97.2e-1103307081374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++cA+ v+++d++ a+ +L+++++++s +gd  qRla+ f+  L+arla+++s++y++l ++ +s    +++l+a++l++ ++P+ k+s
  Zosma93g00730.1 330 LRTLLIHCAQSVAADDHRTASDILKQIRQHSSAYGDGSQRLAHIFADCLEARLAGNGSQIYHSLVAKWQS---ATDTLKAHHLYHAACPFRKIS 420
                      6789************************************************************999998...89******************* PP

             GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                      h+ aN+ I + ++++     +++HiiDf+i  G+QWp+L+q L+  p+gpp+lRiTg++ p++g   +e++eetg+rLa +A++++vpfe+++ 
  Zosma93g00730.1 421 HFFANRNIINLADKAkrmknNTIHIIDFGIYFGFQWPCLIQRLSLLPGGPPKLRITGIDVPQPGfrPNERIEETGRRLAGYADRFNVPFEYHP- 513
                      ***********999855555667****************************************9*****************************. PP

             GRAS 182 vakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      +a+++e++e+e+L+v++ +E+++Vn+ ++l +l+de+v   + +r+ vL+ +k+l+P+v++    +  ++++ F++rf eal ++s  fd+lea
  Zosma93g00730.1 514 IASKWEKIEIEDLKVDNnNEVVVVNCLYKLRNLVDETVVAVDsPRNVVLNKIKKLNPNVFIQGVVNGAYSAPFFVTRFREALFHFSCSFDMLEA 607
                      7***************99******************9866555*************************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                      ++pre+ er  +E+e+ gre++nv+aceg+er+er e +++W+ r  +aG+ ++pl++++ k+ k  ++ ++ + + ++ +  +lv+gWk+r +
  Zosma93g00730.1 608 TVPREHPERLLIEKEIYGREAMNVIACEGSERVERPEIYKQWQVRNLRAGYIQLPLNKEILKESKDKVHSCYHKDFVIDTDGRWLVQGWKGRII 701
                      ************************************************************************888******************* PP

             GRAS 368 vsvSaWr 374
                      +++SaW+
  Zosma93g00730.1 702 YAISAWK 708
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.932304688IPR005202Transcription factor GRAS
PfamPF035142.5E-107330708IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MVTMDPGIEL TRLIDEFRFG DSLPPLSPPP VPVPSSLPIH NFGNTFRLDT QSPRPNCCTN  60
HAVPPQVDLE TSYSETEESD ITLSYIRRML LEEDNMMEED KFNVPLGDSD LLAVEKPFLE  120
ILGQDYPPLS HVEYGLPTTP DTNSSNSTVH STLIDDHPSP PYSLTSFDSN NTIILDAHYT  180
QSKSLPVWNF NKGVEEASKF LPDYDNLFHQ CKIKAEEENR HHDVFNSILS GRKKSYNDIL  240
DGEDDEGRRS IKQPAFSFSS RESIQSELFD EVLLCPHGEM NQDGISKLRE DLKSKITRNG  300
SDTKRVSSRG GKSKSKKKNV KSKNKDVVDL RTLLIHCAQS VAADDHRTAS DILKQIRQHS  360
SAYGDGSQRL AHIFADCLEA RLAGNGSQIY HSLVAKWQSA TDTLKAHHLY HAACPFRKIS  420
HFFANRNIIN LADKAKRMKN NTIHIIDFGI YFGFQWPCLI QRLSLLPGGP PKLRITGIDV  480
PQPGFRPNER IEETGRRLAG YADRFNVPFE YHPIASKWEK IEIEDLKVDN NNEVVVVNCL  540
YKLRNLVDET VVAVDSPRNV VLNKIKKLNP NVFIQGVVNG AYSAPFFVTR FREALFHFSC  600
SFDMLEATVP REHPERLLIE KEIYGREAMN VIACEGSERV ERPEIYKQWQ VRNLRAGYIQ  660
LPLNKEILKE SKDKVHSCYH KDFVIDTDGR WLVQGWKGRI IYAISAWKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4833670925380Protein SCARECROW
5b3h_A8e-4833670924379Protein SCARECROW
5b3h_D8e-4833670924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020266017.10.0LOW QUALITY PROTEIN: scarecrow-like protein 9, partial
RefseqXP_020577687.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A0K9NIP30.0A0A0K9NIP3_ZOSMR; GRAS family transcription factor containing protein, expressed
STRINGXP_008784606.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-171GRAS family protein