PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma93g00240.1 | ||||||||
Common Name | ZOSMA_93G00240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22511.2 Da PI: 5.9598 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.8 | 3.8e-38 | 13 | 110 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC ++Cv+apyf ++q + +f vhk+FGasnv+kll ++p ++r++a++++ +eA+ar+rdPvyG+v+ i++lq+q+++l++e Zosma93g00240.1 13 SCGACKFLRRKCMEGCVFAPYFSHDQgALHFSSVHKVFGASNVSKLLLHIPLHRRSEAAATISFEAQARMRDPVYGCVAYIFSLQRQVARLQQE 106 6*************************889***************************************************************** PP DUF260 94 lall 97 +++l Zosma93g00240.1 107 IDSL 110 9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.724 | 12 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-36 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAGELGMVVV PSSCGACKFL RRKCMEGCVF APYFSHDQGA LHFSSVHKVF GASNVSKLLL 60 HIPLHRRSEA AATISFEAQA RMRDPVYGCV AYIFSLQRQV ARLQQEIDSL TMNPSTYNNT 120 NIWNNGGVSE FTPNQHGYYV NFSSSNSDAT LAVDRSTQPD HEDDHPAELH PLFREAIDRL 180 EHNLFSDIVE DDPPAVGMYG CVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 12 | 109 | 10 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 12 | 109 | 10 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017219707.1 | 1e-50 | PREDICTED: LOB domain-containing protein 29-like | ||||
Refseq | XP_021910245.1 | 1e-50 | LOB domain-containing protein 33-like | ||||
Swissprot | Q5UG13 | 2e-49 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | A0A0K9NKR4 | 1e-152 | A0A0K9NKR4_ZOSMR; Putative LOB domain-containing protein | ||||
STRING | evm.model.supercontig_1.438 | 4e-50 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 6e-49 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Zosma93g00240.1 |
Publications ? help Back to Top | |||
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