PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma93g00030.1

Common Name

ZOSMA_93G00030

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C3H

Protein Properties

Length: 949aa MW: 107813 Da PI: 9.6557

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma93g00030.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5e-08	927	947	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lC+++++ G Cky ++CkF H Zosma93g00030.1 927 RLCHYYQQ-GRCKYSENCKFLH 947 79****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	4.58E-5	109	154	No hit	No description
PROSITE profile	PS50800	9.527	119	153	IPR003034	SAP domain
SMART	SM00513	0.0011	119	153	IPR003034	SAP domain
Pfam	PF02037	6.9E-9	120	153	IPR003034	SAP domain
Gene3D	G3DSA:1.10.720.30	6.1E-6	120	154	IPR003034	SAP domain
SuperFamily	SSF90229	6.59E-6	923	948	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.169	923	948	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-6	925	947	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-5	927	947	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence Send to blast
MAIMDSKSAE ESGNSVNGEF RTDIFYTHDS ETDCTDSVES MEEEEDDSDD PSFDVLEKTR 60 IRLSKISLKK SRCRPCKKNK DLDSDNEIES VQMIEVPTLD DDDEKYFEKV EKMIKDGQEK 120 KLKVDQCKTY LRKHGLRLTG TKDVLIGRIK EYLQIIDGEG EKKYPESSFI VNCQGDSCMG 180 DVLIFEQNVY EMSATGPSLG TRTIAGRVVK ESYGSAKQQH TFTIEVLWSK GVKPFPPLHP 240 LLIKGRNLYK LKTLRQKWSD EGDRTKILQE KHTRGTIARS CRDIRVNAKK RGGRRRDNNN 300 GMSKTSIIAP RGALQSQPQP IMSIQQLNQQ SNHMVNTANK NVKSTVISEK PIIGGEQATH 360 KTLRRDNNNG MSKTSIIASQ GAPQSQPQAI MPIQQPKQQP NHMANTANKN VKSTIISEKL 420 IVDIISHRDV HKLNIRSSQV ITNRSQNHMK SPNKSGGRFY DPYPESSPFQ NQQGSYGSVD 480 GRLPFKDLTR VQYSHHDAHK LNIRSSQVIM NRGQDYMKSS NGLGGRFYDP YPESPPFQNQ 540 QCSYGSIDGR LPFKDLTRVQ HSHHDAHKLN IRSSQVIMNR GQDHMKSSNG LGGRFYDPYP 600 ESLPFQSRQG SYGSVDGRHP YKDLTCVQHS HHDAHKLTIR SSQVIMNRGQ DHMKTSNGLG 660 GRFYDPYPES PSFQNRQVSY GSVDGRYPYK DLTRVQHSHH DTHKLNIRSS QVIMNRGQDY 720 MKSSNGLGGR FYDLYPESPP FQNQQGSYDS VDGRLPFKDL ARVQHSHHDA HKLNIRSSQV 780 IINRGQDDMK SSNGLGGRFY DPYPESPPFQ NQQGSYGSVD GRLPFKDLTR VQHSHHDAHK 840 LNIRSSQVII NRGQDDMKSS NGLSGRSYDP YPESSPFQNQ QGSYGSVDGR HPYKDLTRVQ 900 HSPDGWFRGN SDRNQGHTNG ISNRRLRLCH YYQQGRCKYS ENCKFLHE*

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence Send to blast

MAIMDSKSAE ESGNSVNGEF RTDIFYTHDS ETDCTDSVES MEEEEDDSDD PSFDVLEKTR  60
IRLSKISLKK SRCRPCKKNK DLDSDNEIES VQMIEVPTLD DDDEKYFEKV EKMIKDGQEK  120
KLKVDQCKTY LRKHGLRLTG TKDVLIGRIK EYLQIIDGEG EKKYPESSFI VNCQGDSCMG  180
DVLIFEQNVY EMSATGPSLG TRTIAGRVVK ESYGSAKQQH TFTIEVLWSK GVKPFPPLHP  240
LLIKGRNLYK LKTLRQKWSD EGDRTKILQE KHTRGTIARS CRDIRVNAKK RGGRRRDNNN  300
GMSKTSIIAP RGALQSQPQP IMSIQQLNQQ SNHMVNTANK NVKSTVISEK PIIGGEQATH  360
KTLRRDNNNG MSKTSIIASQ GAPQSQPQAI MPIQQPKQQP NHMANTANKN VKSTIISEKL  420
IVDIISHRDV HKLNIRSSQV ITNRSQNHMK SPNKSGGRFY DPYPESSPFQ NQQGSYGSVD  480
GRLPFKDLTR VQYSHHDAHK LNIRSSQVIM NRGQDYMKSS NGLGGRFYDP YPESPPFQNQ  540
QCSYGSIDGR LPFKDLTRVQ HSHHDAHKLN IRSSQVIMNR GQDHMKSSNG LGGRFYDPYP  600
ESLPFQSRQG SYGSVDGRHP YKDLTCVQHS HHDAHKLTIR SSQVIMNRGQ DHMKTSNGLG  660
GRFYDPYPES PSFQNRQVSY GSVDGRYPYK DLTRVQHSHH DTHKLNIRSS QVIMNRGQDY  720
MKSSNGLGGR FYDLYPESPP FQNQQGSYDS VDGRLPFKDL ARVQHSHHDA HKLNIRSSQV  780
IINRGQDDMK SSNGLGGRFY DPYPESPPFQ NQQGSYGSVD GRLPFKDLTR VQHSHHDAHK  840
LNIRSSQVII NRGQDDMKSS NGLSGRSYDP YPESSPFQNQ QGSYGSVDGR HPYKDLTRVQ  900
HSPDGWFRGN SDRNQGHTNG ISNRRLRLCH YYQQGRCKYS ENCKFLHE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NIF6	0.0	A0A0K9NIF6_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13107	20	22

Link Out ? help Back to Top
Phytozome	Zosma93g00030.1