PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma91g00550.1 | ||||||||
Common Name | ZOSMA_91G00550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 24661.5 Da PI: 8.6741 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.1e-15 | 28 | 73 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed l ++v +G+ +W++Ia ++ gR++k+c++rw++ Zosma91g00550.1 28 RGHWRPAEDTMLRELVSAYGPQNWNLIADRLH-GRSGKSCRLRWFNQ 73 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++ +G++ W+ Iar + gRt++ +k++w+ Zosma91g00550.1 80 RRAFSEEEEEKLMAAHRIYGNK-WAMIARLFS-GRTDNAVKNHWHV 123 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.389 | 23 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-13 | 27 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.24E-27 | 28 | 121 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 29 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.59E-12 | 31 | 72 | No hit | No description |
Pfam | PF13921 | 4.3E-15 | 31 | 91 | No hit | No description |
PROSITE profile | PS51294 | 25.478 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 79 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-20 | 82 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.62E-11 | 82 | 122 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAPTIDKDCH DDDHSKKQQK QTAVVYGRGH WRPAEDTMLR ELVSAYGPQN WNLIADRLHG 60 RSGKSCRLRW FNQLDPKINR RAFSEEEEEK LMAAHRIYGN KWAMIARLFS GRTDNAVKNH 120 WHVIMARKYR DQSDHHSPPP PALAAAASGN YNNNYYHHHH GLYHFPAPLM IALKQHQHLQ 180 LQDHQSPPIS ATESSSEPTD VSSSPSFIDF LGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 28 | 128 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017222090.1 | 4e-69 | PREDICTED: transcription factor MYB80 | ||||
Swissprot | Q9SEZ4 | 2e-65 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A0K9NJ47 | 1e-162 | A0A0K9NJ47_ZOSMR; Uncharacterized protein | ||||
STRING | XP_004172495.1 | 2e-71 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26780.1 | 4e-67 | myb domain protein 117 |
Link Out ? help Back to Top | |
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Phytozome | Zosma91g00550.1 |
Publications ? help Back to Top | |||
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