PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma91g00130.1 | ||||||||
Common Name | ZOSMA_91G00130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48506.2 Da PI: 6.8979 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4e-10 | 63 | 85 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C +f++ G+C yG++C+++H+ Zosma91g00130.1 63 PDCIYFLKHGICGYGSNCRYNHS 85 79********************8 PP | |||||||
2 | zf-CCCH | 27.6 | 4.9e-09 | 103 | 127 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+r G CkyG +Ck++H++ Zosma91g00130.1 103 QPDCQHFLRAGSCKYGYTCKYNHPK 127 789********************96 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 149 | 172 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++++tG+Ck+G +CkF+H++ Zosma91g00130.1 149 KSCPYYMKTGYCKFGISCKFNHPQ 172 66********************97 PP | |||||||
4 | zf-CCCH | 38.4 | 2.1e-12 | 288 | 313 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++++G CkyG++Ck++H++ Zosma91g00130.1 288 DQPDCQYYMKNGSCKYGSSCKYHHPR 313 6899********************96 PP | |||||||
5 | zf-CCCH | 28.5 | 2.6e-09 | 334 | 358 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f++ +GtCkyG CkF H+ Zosma91g00130.1 334 GQAVCGFYSNYGTCKYGLGCKFDHP 358 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.9E-4 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-8 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.13E-5 | 64 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 100 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-4 | 100 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.756 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-10 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 150 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.455 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 288 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.07E-6 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 292 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.02E-5 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.319 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-4 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 334 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MPENNAVSDS SEVSVENLQE SIENIKIEDA DKDLEGGALL PHSNNVIGVK EMDAIVQNGR 60 AVPDCIYFLK HGICGYGSNC RYNHSVRGQE HISISELPER VGQPDCQHFL RAGSCKYGYT 120 CKYNHPKNKL HEGPLSYNSY GLPMRQDEKS CPYYMKTGYC KFGISCKFNH PQPAAGHENV 180 YHMPGSSVCA PLGSSTASSS GLPLTGGIPA WSPRPYISNP PINGLSSYMP FVYPPLHGII 240 PAQHGLNSYM GPINPITTTG AIVASPTSNS SHIQYGYNAH ILFPERPDQP DCQYYMKNGS 300 CKYGSSCKYH HPRDRITSSA ACTVGPLGLP LRPGQAVCGF YSNYGTCKYG LGCKFDHPLT 360 GYYNYGTAST YPPSNPSAQI HYQRNSSVIS TPFDVSKSKT LNLTHGASKS EETPINVECV 420 DSNEEVQQNS SEIISSDSLQ VTEAI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NJF5 | 0.0 | A0A0K9NJF5_ZOSMR; Zinc finger CCCH domain-containing protein 26 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 9e-83 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma91g00130.1 |