PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g01800.1
Common NameZOSMA_8G01800
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 352aa    MW: 39367.6 Da    PI: 5.6705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g01800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.61.6e-1651100255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h+  E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++ YI+ Lq
  Zosma8g01800.1  51 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDKASFLLEVIGYIQFLQ 100
                     889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-2346123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1949120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.5074999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-1551104No hitNo description
PfamPF000108.1E-1451100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1255105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHMEVTSNVS KGFADDYEEE EEEDFGKRDA GELTVRVDRE SNSDQKTATP RSKHSVTEQR  60
RRSKINERFQ ILRDLIPHSD QKRDKASFLL EVIGYIQFLQ EKVQSYESVY AGQNQENTNL  120
TPWVKVLFRS FWEKAQKKSK VAMEELNHYA QPIKNNGPES PSGFIFSGCN TDSAGQCMLQ  180
NDENPVQYRN AGSGLVTRKE TAVSVPLQPY RSSGNGFFQP QMLISDFQNV ASASPTHLLR  240
LGNSFDCELN NDDGLITDDG TISISNAYSQ GLLHVLTQTL KSSGVDLSRT RISVQISLGK  300
RTLKGNTFIQ QGAEDPNPAS EYQVFEDSHV VDSTCGNELV QVQKRHKPGM S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJT60.0A0A0K9NJT6_ZOSMR; Transcription factor BIM2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-56BES1-interacting Myc-like protein 2