PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma8g01510.1 | ||||||||
Common Name | ZOSMA_8G01510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 49954.6 Da PI: 9.6283 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 8.9e-06 | 180 | 202 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ +++L +H+ + H Zosma8g01510.1 180 SCPECGEVFTKPESLDHHQIVrH 202 8******************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 179 | 202 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.328 | 179 | 207 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.01E-17 | 204 | 260 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.6E-11 | 206 | 446 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
SuperFamily | SSF56399 | 2.01E-17 | 294 | 446 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MALATLVPTT TDHSSRHYRR KHHHHHGNKN KPPRFVLDAE EDEEEVRRRR KMARKRKKLQ 60 PVVLQTSPTS SWAQFKNLIT CRTTADPSQI RSTPSGRLGS TCSKICAMKE VARNNTRIVH 120 RGDHDHSPTS KEAVVLKPRS WVGGSHLSSK GLQLRKLTGC YECHSVTQPI RYPTPRTLCS 180 CPECGEVFTK PESLDHHQIV RHAVSELGPE DSGRKIVEII FDSSWSKKEK TMVTFDRPIL 240 YCKIERILKV HNTQRTISRF EDYRDAIKSR AATHFLHTTT TTGDGNSNSK KKNPRCAVDG 300 NELLRFYSTT LTCSLGAHGS TSLCSDYSST PACGVCSVIR YGFGRVKQEG GGKGVRTTAS 360 SRRAHECFSP PTVEEDERRM VMLVCRVIAG RVRRVGDTFD ESGVGVGGGG YDSVAGKDCE 420 GSSGNLEELV VTNPRAILPC FVVIYNTSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 57 | RRRRKMARKRKK |
2 | 46 | 58 | RRRRKMARKRKKL |
3 | 53 | 57 | RKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010268701.1 | 1e-124 | PREDICTED: uncharacterized protein LOC104605577 | ||||
TrEMBL | A0A0K9NLN0 | 0.0 | A0A0K9NLN0_ZOSMR; C2H2-like zinc finger protein | ||||
STRING | XP_010268701.1 | 1e-123 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12431 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-107 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma8g01510.1 |