PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g01330.1
Common NameZOSMA_8G01330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 613aa    MW: 69454.4 Da    PI: 5.1451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g01330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13427472454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h ++Er+RR+++N++f  Lr+l+P       +K++K++iL  ++eY+k L
  Zosma8g01330.1 427 NHVMAERQRREKMNERFIILRSLVPFV-----TKMDKVSILGDTIEYVKLL 472
                     799***********************8.....8***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-516189IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.888423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-19425493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17427487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-11427472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-14427477No hitNo description
SMARTSM003533.5E-17429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MATGKLQNQL QLVVQSIQWT YSVRWSFCNH QRLLVWRDGY YNGAIKTRKT VQPLEVSTEE  60
ASLQRSQQLR ELYDSLSAGS EFYGSARRPC ASLSPEDLNE SEWFYLMCLS FSFPPTVGLP  120
GKAFAEQRHV WLERANEADS NLFPRAILAK SAGMQTVVCI PFRDCVLEIG HTEKIEEDLG  180
LIQHARSIFI NGYEQLQDQN LQQYSKPVLS DNSTSNAASS LMFNSPPLAM MQHHQPVGIG  240
HQDVDINTDT TSNDESEEES EEESEAEGGS GDSNMVITNK QQQQAGTDQN VAIAEVENRM  300
YLQMSEDFFQ LSTPGNFSNI KTFNVQSDDD CSSHYSQTIS TILQNNLMMQ MQWLSDNVNL  360
PISQNSVFSD WRINIRDGLH GTETLAGSQL VLKYMLLTVP LLHTKPKDNN KGQTILKTTV  420
QDDLGANHVM AERQRREKMN ERFIILRSLV PFVTKMDKVS ILGDTIEYVK LLRRQVHEFE  480
CQQSAMEVEQ ISKEPETLQS QMYIESSQAN TIQRSLERSR LRAERESGTI LQVSIIEADA  540
LLELQCPNRE GLLLKIMQKL HQLLLEITSV QFSSTNDVFI ADIRAKVKEN LHGKRASIVE  600
VKKAIHKVLS SY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-1861899192Transcription factor MYC3
4rqw_B8e-1861899192Transcription factor MYC3
4rs9_A8e-1861899192Transcription factor MYC3
4yz6_A8e-1861899192Transcription factor MYC3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906882.10.0basic helix-loop-helix protein A isoform X2
SwissprotE3SXU41e-161BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0K9NJN80.0A0A0K9NJN8_ZOSMR; Uncharacterized protein
STRINGXP_008790987.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.16e-80bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]