PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g00830.1
Common NameZOSMA_8G00830
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARF
Protein Properties Length: 776aa    MW: 87496.4 Da    PI: 6.1624
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g00830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.3e-23131232199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  Zosma8g00830.1 131 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftMQPPAQ--ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKKLIAGDSVLFI--WNE 221
                     99*****************************96555444..8************************************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  Zosma8g00830.1 222 NNQLLLGIRRA 232
                     8889****997 PP
2Auxin_resp112.54.1e-37257340183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aaha+ t s F+++YnPr+s+seFv++++k++k++  +++s+GmRf+m fete+ss rr++Gt++++ dldpvrWpnS+Wrs+k
  Zosma8g00830.1 257 AAHAIPTDSQFTIFYNPRVSPSEFVIPLSKYVKSVFhTRISIGMRFRMLFETEESSVRRYMGTITDIGDLDPVRWPNSHWRSVK 340
                     79*******************************986599******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-46117260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-40125246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-21130231No hitNo description
SMARTSM010192.1E-24131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393131233IPR003340B3 DNA binding domain
PfamPF023623.3E-21131232IPR003340B3 DNA binding domain
PfamPF065076.7E-32257340IPR010525Auxin response factor
SuperFamilySSF542775.56E-6673752No hitNo description
PROSITE profilePS5174520.644678762IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MKASTVCSSG EPSQEQQGSR KNCLNSELWH ACAGPLVSLP NSGTRVLYFP QGHSEQVVAS  60
TNKEVEGHIP NYPNLPPQLI CYLHNVTMHA DTDTDEVYAQ MTLQPLSAEE QKDNYLPIEI  120
GIQTKQPMNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFTMQPPAQE LIARDLHDVE  180
WKFRHIFRGQ PKRHLLTTGW SVFVSAKKLI AGDSVLFIWN ENNQLLLGIR RANRTQTSIP  240
SSVISSDSMH MGLLAAAAHA IPTDSQFTIF YNPRVSPSEF VIPLSKYVKS VFHTRISIGM  300
RFRMLFETEE SSVRRYMGTI TDIGDLDPVR WPNSHWRSVK VGWDESTTGY RQPRVSLWEI  360
EPLTTFPMYP SLFPLRLKRP WYPGASSLQD DGNSLMWLRG ETGDHDLQAL GMSQWMQRTV  420
EPPMLNIEHN YYQEMAAAAL QDIRSSDGLK QQFLQQHPLQ FTHQGLTNSD NNQVPLQQII  480
PQAHQLRQIS SNLQLHGITE NNHSCNSPHP TFLQSFPEHA NQQVQMQQVY HESFQIPNNQ  540
IQQKTVFPDA TTNFSQASNP IQQNMMATLL KFSKSSPPSS IMNDPTFTTN SVSLTPEITE  600
HGNIDPQNHT LFGVNLDNQS PLITGPMPSL AITSSLKNNV NGNGSGSTLP YGNSCFQNNM  660
YGCTDESPSL LHSVDKTETF VKVYKSGSVG RSLDITRFND YNELREELGQ MYGIEGLLED  720
PLRSGWQLVF VDRENDVLLL GDDPWESFVN NVWYIKILSP EDVHKMGKQC FESFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571436141388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029123480.10.0auxin response factor 12 isoform X1
RefseqXP_029123481.10.0auxin response factor 12 isoform X1
RefseqXP_029123482.10.0auxin response factor 12 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A0K9NJZ20.0A0A0K9NJZ2_ZOSMR; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]