PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma89g00900.1
Common NameZOSMA_89G00900
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 311aa    MW: 33468.2 Da    PI: 7.215
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma89g00900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer98.74.3e-3181136357
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                      k++Y eClkNhAa+lGgh +DGCgEfm+s++++ +++++l+CaACgCHRnFHR++ 
  Zosma89g00900.1  81 KLEYMECLKNHAAALGGHILDGCGEFMASPDTNpSEPTSLTCAACGCHRNFHRQRY 136
                      689******************************9*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.4E-2682135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1884134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.9684135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.5E-2884134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.8E-25172237IPR009057Homeodomain-like
SuperFamilySSF466891.46E-14173236IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-21179236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEIWRLNQIV QRPIPLAAVL PPEGEHHSIM EENGNDEDSI VVSKSNAHPV PISYAATNGA  60
IVPVDGHCCN DGGKRSTKSR KLEYMECLKN HAAALGGHIL DGCGEFMASP DTNPSEPTSL  120
TCAACGCHRN FHRQRYIGEA EVDDSNNGGN DGPCMLMALS RAGCRPLMDS ADPQQPRRKK  180
RFRTRFSCEQ KEMMRQLAQR LGWRMPKRDD VMLDESCRAI GVSRSVFKVW MHNNKNSSLN  240
TVATGLNGKD DDVLNGNSVD NGNENANGVS SNHDRSRSGS RSGGGGGDVD GVSSSSSPSP  300
SPSCSTSPSR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-191802371875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937133.15e-50zinc-finger homeodomain protein 9
SwissprotQ9LXG02e-47ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0K9NM470.0A0A0K9NM47_ZOSMR; Zinc finger homeodomain 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.13e-49homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]