PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma89g00820.1 | ||||||||
Common Name | ZOSMA_89G00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10161.3 Da PI: 9.7331 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 14 | 58 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ + + +a + + ++ +Wk Iar++g g++++++k ++ Zosma89g00820.1 14 VWSMKQNKVFERALAVYDKDapdRWKNIAREVG-GKSEEEVKRHYE 58 589999999*********99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.239 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 9.4E-5 | 11 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.35E-12 | 13 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-6 | 14 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.52E-6 | 15 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-6 | 15 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MASNSIRSSS TNSVWSMKQN KVFERALAVY DKDAPDRWKN IAREVGGKSE EEVKRHYELL 60 VEDVRRIESG FIPYPYGSTA ASTNARSYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-27 | 15 | 75 | 11 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795931.1 | 8e-34 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 2e-29 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0K9NK50 | 1e-58 | A0A0K9NK50_ZOSMR; Protein RADIALIS-like 6 | ||||
STRING | XP_008795931.1 | 3e-33 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-30 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma89g00820.1 |
Publications ? help Back to Top | |||
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