PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma88g00680.1 | ||||||||
Common Name | ZOSMA_88G00680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 319aa MW: 36697.9 Da PI: 6.8426 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.9 | 3.5e-48 | 51 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....................kvkaeekewyfFskrdkkyatgkr 73 lp GfrF P+deelv++yL+kk++++++ + ++ evd++++ePw+Lp + +k + +ewyfFs rd+ky+tg+r Zosma88g00680.1 51 LPLGFRFFPNDEELVCHYLCKKINKERVCE-GTLVEVDLHTCEPWELPgQylrsnislhvhfiylscpadLAKLSATEWYFFSFRDRKYSTGSR 143 699************************777.78***************54899999999999999888864445889***************** PP NAM 74 knratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +nratk+gyWkatgkd++v++ +++lvg++ktLvfy+grap+g kt+Wvmhe+r+ Zosma88g00680.1 144 TNRATKTGYWKATGKDRSVYDPmTHALVGMRKTLVFYHGRAPNGIKTSWVMHEFRM 199 *********************978888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-53 | 43 | 218 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.779 | 51 | 218 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-25 | 52 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MITTAQHPNL YQFNSIQATY LLATLLLGPT GRTDKVLRQS SMGLNQVESR LPLGFRFFPN 60 DEELVCHYLC KKINKERVCE GTLVEVDLHT CEPWELPGQY LRSNISLHVH FIYLSCPADL 120 AKLSATEWYF FSFRDRKYST GSRTNRATKT GYWKATGKDR SVYDPMTHAL VGMRKTLVFY 180 HGRAPNGIKT SWVMHEFRME TLHMPPKEDW VLCRVFSKRK EEIPSFQVLD SCTSSSVMES 240 SSFMDAVPTT MPTMAGYNEH QFATMFTTNF PIQQQQEEEN NIILNDINNK SLMNLEITPQ 300 YNEYNGLLLG DQDMTSLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-44 | 46 | 221 | 10 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010906799.1 | 9e-91 | NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0K9NKV7 | 0.0 | A0A0K9NKV7_ZOSMR; Putative NAC domain-containing protein 21/22 | ||||
STRING | GSMUA_Achr8P18980_001 | 7e-89 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-76 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Zosma88g00680.1 |