PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma88g00640.1
Common NameZOSMA_88G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 272aa    MW: 30821.5 Da    PI: 4.9576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma88g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.7e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l   ++++G  +W++ +r  g+ R++k+c++rw +yl
  Zosma88g00640.1 14 KGSWTAEEDMILMLHIQRYGHANWRSLPRQAGLFRCGKSCRLRWINYL 61
                     799*******************************************97 PP
2Myb_DNA-binding55.99.6e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e ++++++++G++ W++Ia++++ gRt++++k+ w++yl
  Zosma88g00640.1  67 RGNFTVEEEETIIKLHQKFGNR-WSAIAAELP-GRTDNEIKNVWHTYL 112
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129412.625961IPR017930Myb domain
SuperFamilySSF466898.07E-3011108IPR009057Homeodomain-like
SMARTSM007176.9E-111363IPR001005SANT/Myb domain
PfamPF002494.2E-121461IPR001005SANT/Myb domain
CDDcd001673.29E-81661No hitNo description
PROSITE profilePS5129426.12762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2765116IPR009057Homeodomain-like
SMARTSM007175.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1667112IPR001005SANT/Myb domain
CDDcd001678.22E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVRAPCCEKI GLKKGSWTAE EDMILMLHIQ RYGHANWRSL PRQAGLFRCG KSCRLRWINY  60
LRPDLKRGNF TVEEEETIIK LHQKFGNRWS AIAAELPGRT DNEIKNVWHT YLKKRLMNDD  120
KKPAVGTMGR KSRNKNDHIP VDFQTNLIGS TSTSTSSGGS IFDQKQQPSQ SSDVSSDSSA  180
RGYVNVLEED EMMFMELPEI DDNFLLPNLP MDQLDTIVAD FPDYDDIVPV LSNGTTSDGE  240
EKDNHQNTED YMDFWLRVFL ESGSTGTDSS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010920477.15e-80transcription factor MYB30
TrEMBLA0A0K9NKE80.0A0A0K9NKE8_ZOSMR; Myb domain protein 15
STRINGXP_008791593.11e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-67myb domain protein 14