PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma87g00240.1
Common NameZOSMA_87G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 641aa    MW: 71916.9 Da    PI: 6.5578
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma87g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2347.4e-11354410155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Zosma87g00240.1 354 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDREEKAARAYDLAALKYWG 410
                      78*******************433.44555535555.779999**************98 PP
2AP249.21.3e-15453504155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+fgt e+Aa+a++ a+ k++g
  Zosma87g00240.1 453 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEKAAEAYDIAAIKFRG 504
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-17354418No hitNo description
SuperFamilySSF541712.75E-13354419IPR016177DNA-binding domain
PfamPF008474.2E-8354410IPR001471AP2/ERF domain
SMARTSM003801.5E-19355424IPR001471AP2/ERF domain
PROSITE profilePS5103216.845355418IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-11355418IPR001471AP2/ERF domain
PRINTSPR003673.9E-6356367IPR001471AP2/ERF domain
PfamPF008471.5E-10453504IPR001471AP2/ERF domain
CDDcd000181.14E-24453514No hitNo description
SuperFamilySSF541713.6E-17453514IPR016177DNA-binding domain
SMARTSM003808.9E-33454518IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17454512IPR001471AP2/ERF domain
PROSITE profilePS5103218.571454512IPR001471AP2/ERF domain
PRINTSPR003673.9E-6494514IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDMGGWLGFS LSPHHHDHHH PNHHTHHQHH PQHQENHQNH LTSTVSENNR TATPSCYSNE  60
GFEAGTGHVS GAGFGFPLGV NEPFCIMEPF RSNDWRFSSP MNSNNSNNSN AEENKCPKLE  120
NFLGGYTENS SAENNSFQHP ISPFNEIYYQ TLNLGSNSNN NCSHHDEINV NMPLTFPNSP  180
LQRQTEEDIR YPFRYLIQNT QNSPSLDETD HLKSHYNLLP ATNFQILDNN PPHNHTASVY  240
DGSVGLDAGS TSISGFKSWL RQNAYAAAGE KQMVEEEEEE GDGNKPSIYN SLSLSMNPIP  300
INTQPPLLGN DIFCPAQTPP MLSLEDRKRP NGKSINRDSN IPRKSIESFG QRTSQYRGVT  360
RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDREEKAARA YDLAALKYWG SATHINFALG  420
VYEKEMEEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  480
YLGTFGTQEK AAEAYDIAAI KFRGLSAVTN FDISRYHVER ICSSDTLISA DLARRSPKTD  540
AVESVEDSNG EEQTAGSSDL PNKTIKSHHS ALSTIMEKPV ETAVTSLPLM DQYGDYSHAF  600
FSILEPKGDN NEDADASTPM RTSGFPPLHQ FPAMFALWNE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787841.11e-160AP2-like ethylene-responsive transcription factor AIL7
TrEMBLA0A0K9NMH90.0A0A0K9NMH9_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGcassava4.1_034000m1e-161(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-119AP2 family protein