PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma85g00860.1
Common NameZOSMA_85G00860
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HB-other
Protein Properties Length: 333aa    MW: 37563 Da    PI: 7.0006
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma85g00860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.52.3e-081375656
                     S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                     +ft+ ++  +e++ ++  n  ps+e+   LA+k            ++ +qV +WFqNrR+ ++
  Zosma85g00860.1 13 RFTPAEVADMEAYLQEvnNAIPSREATIALADKFsasperlgktTIQFKQVWNWFQNRRYSQR 75
                     699************766999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-10579IPR009057Homeodomain-like
SMARTSM003890.007781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-81384IPR009057Homeodomain-like
PROSITE profilePS5007110.4461377IPR001356Homeobox domain
CDDcd000860.001241375No hitNo description
PfamPF000467.0E-61375IPR001356Homeobox domain
PfamPF167192.7E-36118245IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRPPNSGGS VFRFTPAEVA DMEAYLQEVN NAIPSREATI ALADKFSASP ERLGKTTIQF  60
KQVWNWFQNR RYSQRAKMSK NQQKINVSPT KKENSIPCRN ATNSLSAGPG RDMSDNSKME  120
FEAKSARDGA WYDVVKFLSH RKSDTDYPEA LLRYDGYGSE EDEWVSIVQN LRLRSFPCEE  180
TECVLLLPGD PVLCFQVDKD HSLYFDAHII DVQRRRHDFR GCRCRFLVQY DHDKSQEIIP  240
LQKICRRPET NVRVSQANDT RSVSNDASMP EDQTNTLQKR KKLKTVMELN KDEVPISVPS  300
AVELTSPEKA TKSDANLDGA AVEASGSGNS QE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A9e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B9e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_A7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-361162491134SHH1 SAWADEE
4iur_B7e-361162491134SHH1 SAWADEE
4iut_A7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-361162491134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397059.11e-127PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-105SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0K9NL670.0A0A0K9NL67_ZOSMR; Sequence-specific DNA binding transcription factor
STRINGGSMUA_Achr4P18450_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.19e-94sequence-specific DNA binding transcription factors;sequence-specific DNA binding