PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma83g00290.1 | ||||||||
Common Name | ZOSMA_83G00290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22725.6 Da PI: 9.5568 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.1 | 1.5e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +ien r vtf+kRr+g+lKKA+ELSvLCd++v +iifss+gklye s Zosma83g00290.1 10 KIENPVYRRVTFCKRRAGLLKKAKELSVLCDVDVGLIIFSSRGKLYELS 58 69********************************************976 PP | |||||||
2 | K-box | 55.8 | 2e-19 | 83 | 173 | 7 | 97 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++ak+++ + e++ Lk+eie+L + R++ Ge+ e++++++L+ Le+qLe + iRs K + ++++ie l++ke l+ +n+ L ++ Zosma83g00290.1 83 NVNNQAKSQKAEVEISVLKQEIEMLHKGMRNMFGEGKEKMTYEQLNVLEKQLEVWIYDIRSAKVKNMIQEIESLKNKEMILKAANEILLQE 173 34778899******************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.35E-27 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.61E-35 | 3 | 74 | No hit | No description |
Pfam | PF00319 | 5.1E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-18 | 85 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.041 | 90 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MVRGKVQMRK IENPVYRRVT FCKRRAGLLK KAKELSVLCD VDVGLIIFSS RGKLYELSTK 60 GTIQELVERY LNPSVTESDD SINVNNQAKS QKAEVEISVL KQEIEMLHKG MRNMFGEGKE 120 KMTYEQLNVL EKQLEVWIYD IRSAKVKNMI QEIESLKNKE MILKAANEIL LQEKSAERSI 180 VRIVEEQSGL LNVSQMM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008219077.1 | 7e-71 | PREDICTED: agamous-like MADS-box protein AGL12 | ||||
Swissprot | A2YQK9 | 2e-66 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 2e-66 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A0K9NLL3 | 1e-138 | A0A0K9NLL3_ZOSMR; MADS-box transcription factor 26 | ||||
STRING | XP_008219077.1 | 3e-70 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 4e-56 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | Zosma83g00290.1 |
Publications ? help Back to Top | |||
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