PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma82g00890.1
Common NameZOSMA_82G00890
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HSF
Protein Properties Length: 385aa    MW: 42536.6 Da    PI: 6.9906
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma82g00890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.57.7e-37391312103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++++sws+++n+f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  e+         weF+++ Fkkg+k+ll+
  Zosma82g00890.1  39 FLTKTYQLVDDPSTDNIVSWSDDNNTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANDFFKKGEKHLLC 123
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Zosma82g00890.1 124 EIHRRKTS 131
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.2E-3831123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-6135128IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.59E-3436128IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-203962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.7E-3239128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2090102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MSHLETTAAA ELAIDCPIPN PNDHPLLSLD PQKPVPAPFL TKTYQLVDDP STDNIVSWSD  60
DNNTFIVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVPERWEFA NDFFKKGEKH  120
LLCEIHRRKT SSSPSSSCSP PPHHPFHLPF QTYFGSDEIM PNWYDASSTP RYMTTSIGGN  180
GYTTTFPVHL GPTSSTPPPP AASLLMDDND RLRRSNAMLM SELAHMRKLH NDIIYFVQNH  240
VRPVAPSNSF PSSLLINTSA RGGVGRSVNN NNIQMLSPPK NSGNGVGCLN SGSTTSSSSL  300
TIVEEPALSK KLNNDNSNSE DEEEEECTPT KLFGVHLAPS SSNSNNKRPL QAPSSPPSPS  360
TKPRFVLNND DLGFKLLMPK SCLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-243513317125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021687474.11e-104heat stress transcription factor B-4-like
SwissprotQ9C6355e-93HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0K9NMD90.0A0A0K9NMD9_ZOSMR; Heat stress transcription factor B-4
STRINGcassava4.1_010465m1e-102(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-85heat shock transcription factor B4