PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma81g00670.1 | ||||||||
Common Name | ZOSMA_81G00670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 276aa MW: 31092.6 Da PI: 9.1899 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.4e-52 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv +yL+kk++++++ + +i+evd+yk++Pw+Lp + ++kewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + Zosma81g00670.1 9 LPPGFRFHPTDEELVLHYLCKKCTSQPIVV-PIIAEVDLYKHDPWKLPGFAIYGDKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGA 101 79*************************999.88***************5444579*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g+kk Lvfy g+apkgekt+W+mheyrl Zosma81g00670.1 102 --PKAIGIKKALVFYAGKAPKGEKTNWIMHEYRL 133 ..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-63 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.629 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MMYGADLHLP PGFRFHPTDE ELVLHYLCKK CTSQPIVVPI IAEVDLYKHD PWKLPGFAIY 60 GDKEWYFFSP RDRKYPNGSR PNRAAGSGYW KATGADKPIG APKAIGIKKA LVFYAGKAPK 120 GEKTNWIMHE YRLADVDRSA RKRNSLRLDD WVLCRIYNKS GGKHSKKAVV TSSTQLQLPK 180 LETPPVILPP QYLQMQTAVV VAENICFDTS DSFPKSSNCS DNVLSPSSYE GNAHRSQVIE 240 STAPEVSRPL ELEPMSSMFQ NTYLQDIFTY LQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-77 | 5 | 160 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002307447.1 | 1e-118 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-108 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K9NM32 | 0.0 | A0A0K9NM32_ZOSMR; NAC domain-containing protein 2 | ||||
STRING | POPTR_0005s20240.1 | 1e-117 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-111 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma81g00670.1 |