PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma81g00360.1 | ||||||||
Common Name | ZOSMA_81G00360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24491.2 Da PI: 10.0371 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 27 | 77 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ g+Wv+eIr+p + ++r++lg++ t+e+Aa+a++ a+ +l+g Zosma81g00360.1 27 PVFHGVR-ERNGGKWVCEIREPLK---KARIWLGTYQTPEMAARAHDVAAIALRG 77 5799**9.7779*********743...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.3E-10 | 27 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-26 | 28 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 28 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-20 | 28 | 87 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.574 | 28 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-7 | 29 | 40 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.12E-27 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 4.0E-7 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MILGDQHCFS ASKRKSGRKK FKETRHPVFH GVRERNGGKW VCEIREPLKK ARIWLGTYQT 60 PEMAARAHDV AAIALRGKYA MLNFKDSLLI LPRASSNSAV DIRSAATHAA AMFRPPLLNR 120 SRKKKIKKKT SDVVMTQSKS TPFPPPSTSA EPQPVQVESQ SDDLVGGGFV DEEEFFDMPG 180 MLRSMVEGLV VAPPQMKQEI EWEDEPWDLG FSLWTYM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940400.1 | 2e-63 | dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A0K9NMI3 | 1e-161 | A0A0K9NMI3_ZOSMR; Dehydration responsive element binding transcription factor 1B | ||||
STRING | XP_008807523.1 | 1e-59 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 5e-47 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma81g00360.1 |