PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma80g00270.1
Common NameZOSMA_80G00270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 302aa    MW: 33867.9 Da    PI: 5.3256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma80g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv ++k  G g+W++ +   g+ R++k+c++rw +yl
  Zosma80g00270.1 14 KGKWTAEEDEKLVSYIKANGEGSWRSMPINAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding46.86.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e++ ++ + lG++ W++Ia ++  gRt++++k++w+++l
  Zosma80g00270.1  67 RGNISPEEEEIIGRLQASLGNR-WSLIATHLV-GRTDNEIKNHWNSHL 112
                      7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.199961IPR017930Myb domain
SuperFamilySSF466892.02E-2611108IPR009057Homeodomain-like
SMARTSM007171.6E-111363IPR001005SANT/Myb domain
PfamPF002492.5E-141461IPR001005SANT/Myb domain
CDDcd001679.42E-91661No hitNo description
PROSITE profilePS5129425.63962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-2365116IPR009057Homeodomain-like
SMARTSM007172.7E-1366114IPR001005SANT/Myb domain
PfamPF002491.5E-1267112IPR001005SANT/Myb domain
CDDcd001673.98E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRAPCCAKV GLKKGKWTAE EDEKLVSYIK ANGEGSWRSM PINAGLLRCG KSCRLRWINY  60
LKDDLKRGNI SPEEEEIIGR LQASLGNRWS LIATHLVGRT DNEIKNHWNS HLSRKLQLQR  120
CPEIPLPVKK KRGRKPKSVT AGANDGRGKT PSRVRKLKQM SGDNKNADSV DCEKKKNTTD  180
TITGDGNSPV IAPVECSGSP SSGLTSENNG SSGGEFDMGE LENMLLLDNF EEMTWNVDDV  240
DYNRIWGNII DDSFFQPPME ITMNDNNDGD DEYRNLDRWL DPEFYTADSK WIDPEFYTTD  300
G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021668816.19e-67transcription factor MYB111-like
TrEMBLA0A0K9NMB20.0A0A0K9NMB2_ZOSMR; Uncharacterized protein
STRINGcassava4.1_008985m2e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-63myb domain protein 12