PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma80g00210.1
Common NameZOSMA_80G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 275aa    MW: 30486.7 Da    PI: 6.9245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma80g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-12207232227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ktelC+ + ++ +C+yG +C+FaHg+
  Zosma80g00210.1 207 KTELCNKWEEMAWCPYGKQCQFAHGM 232
                      8***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-15203238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-9203237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826205233IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031205232IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9207232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-12239272IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8240271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.605243271IPR000571Zinc finger, CCCH-type
SMARTSM003560.038243270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMDGGEITAP DTPPISSSPT TPISTISSSS FLSQTFRFSH NEGDAIDDDF LEKERIRISK  60
MLGDATSNYK YCINLLCRAI SEIEALQKEK MDLTEEFLSA KRKLDVFIEG PIGKENMAPS  120
SSSSSMSPVV VGGKRSVPKS ISIRSKGFLS IKNTNIADGE RNSNGNSLGI EVKHPHRLLV  180
PVTGKEGIEE TQKSGVELEV YDQGMAKTEL CNKWEEMAWC PYGKQCQFAH GMEELRPVIR  240
HPRYKTQLCR MVTLPEGCPY GHRCHFRHPV SDQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-19207268566Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6L5G14e-45C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9NMA90.0A0A0K9NMA9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]