PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma7g00970.1
Common NameZOSMA_7G00970
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 311aa    MW: 34650.4 Da    PI: 8.9922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma7g00970.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-083580245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT eE + + ++ + +  +   +W+ I ++++ g++l+q+k ++ 
   Zosma7g00970.1 35 GNWTMEENKVFENGLAVYDIDtaeRWENIVEMLP-GKSLEQVKKHYS 80
                     89********************************.**********95 PP
2Myb_DNA-binding41.14.3e-13181225347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + k++G+g+W+ I+r     Rt+ q+ s+ qky
   Zosma7g00970.1 181 PWTEEEHRLFLLGLKKYGKGDWRNISRNYVISRTPTQVASHAQKY 225
                      8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.7712983IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-53286IPR009057Homeodomain-like
SMARTSM007175.0E-63385IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-103590IPR009057Homeodomain-like
CDDcd001679.72E-63679No hitNo description
Gene3DG3DSA:1.10.10.604.2E-12170225IPR009057Homeodomain-like
PROSITE profilePS5129420.953174230IPR017930Myb domain
SuperFamilySSF466898.22E-17176230IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-18177228IPR006447Myb domain, plants
SMARTSM007171.7E-12178228IPR001005SANT/Myb domain
CDDcd001673.88E-10181226No hitNo description
PfamPF002492.0E-11181225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEMVSWGGLD DIHSPASYIS SSVDWVYADI NSKTGNWTME ENKVFENGLA VYDIDTAERW  60
ENIVEMLPGK SLEQVKKHYS YLQQDIISIE AGLIPIPSYT TPYSNRNNID ASPPFTLDWV  120
NSRGVGLGGG TGRFQYHTVK HNHHSSSSSI TTTTTTSTAT HGAKRHGGRI CSDHERKKGV  180
PWTEEEHRLF LLGLKKYGKG DWRNISRNYV ISRTPTQVAS HAQKYFIRLS SGGKDKRRSS  240
IHDITTVNLS DNSRLPPPPP PPCADKTATN SNHQCKESST AAFFNSKFSN AGLFNSNRHH  300
NHHHQSGITD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-16371051179RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445667.12e-82PREDICTED: transcription factor DIVARICATA
RefseqXP_016689129.12e-82PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A0K9NPR40.0A0A0K9NPR4_ZOSMR; Transcription factor DIVARICATA
STRINGGorai.009G093700.16e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-66MYB family protein