PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma79g00240.1
Common NameZOSMA_79G00240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 98aa    MW: 11265 Da    PI: 10.0246
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma79g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.2e-141758748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     eEd ll ++++++G g+W+ ++++ g++R++k+c++rw++yl
  Zosma79g00240.1 17 EEDVLLTRYIEKHGEGNWSHVPARAGLRRCRKSCRLRWLNYL 58
                     9****************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.164662IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-19661IPR009057Homeodomain-like
SMARTSM007175.7E-81060IPR001005SANT/Myb domain
SuperFamilySSF466892.01E-201589IPR009057Homeodomain-like
CDDcd001671.96E-91758No hitNo description
PfamPF002491.4E-131758IPR001005SANT/Myb domain
PROSITE profilePS500903.9965997IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-86293IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSQIEDISVR KGARSCEEDV LLTRYIEKHG EGNWSHVPAR AGLRRCRKSC RLRWLNYLQP  60
NIKRGHFSAD EVDMIIRLHN LLGNKYLIIT THVVSGH*
Functional Description ? help Back to Top
Source Description
UniProtActivates DODA1 and CYP76AD1 in the betalain red pigment pathway.
UniProtActivates DODA1 and CYP76AD1 in the betalain red pigment pathway. {ECO:0000305|PubMed:25436858}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: This dominant Y allele is highly expressed, resulting in an inner red flesh of the beet. {ECO:0000305|PubMed:25436858}.
UniProtINDUCTION: This recessive y allele is expressed at low levels, resulting in an inner white flesh of the beet. However, yy plants still can make pigments but never make as much of it or have it in the same location as YY or Yy plants with an inner red flesh. {ECO:0000305|PubMed:25436858}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744843.14e-40PREDICTED: transcription factor MYB114-like isoform X2
SwissprotM1ETA54e-32MYB1R_BETVU; Transcription factor MYB1
SwissprotM1ETK34e-32MYB1W_BETVU; Transcription factor MYB1
TrEMBLA0A0K9NNK37e-66A0A0K9NNK3_ZOSMR; Myb domain protein 68
STRINGGorai.001G087200.14e-38(Gossypium raimondii)
STRINGGorai.001G087400.14e-38(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-34myb domain protein 113
Publications ? help Back to Top
  1. Stracke R, et al.
    Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris).
    BMC Plant Biol., 2014. 14: p. 249
    [PMID:25249410]
  2. Hatlestad GJ, et al.
    The beet Y locus encodes an anthocyanin MYB-like protein that activates the betalain red pigment pathway.
    Nat. Genet., 2015. 47(1): p. 92-6
    [PMID:25436858]