PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma79g00230.1 | ||||||||
Common Name | ZOSMA_79G00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27135.1 Da PI: 9.9482 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.6e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd ll ++++++G g+W+ ++++ g++R++k+c++rw++yl Zosma79g00230.1 11 KGAWSCEEDVLLTRYIEKHGEGNWSHVPARAGLRRCRKSCRLRWLNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.3 | 9.5e-15 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E + +++++++lG++ W++Ia +++ gRt++++k++w+ + Zosma79g00230.1 64 RGHFSADEVDMIIRLHNLLGNK-WSLIAGRIP-GRTANDIKNHWNAH 108 799*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-22 | 6 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.914 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-9 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 23.352 | 59 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 62 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 64 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-9 | 67 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSQIEDISVR KGAWSCEEDV LLTRYIEKHG EGNWSHVPAR AGLRRCRKSC RLRWLNYLRP 60 NIKRGHFSAD EVDMIIRLHN LLGNKWSLIA GRIPGRTAND IKNHWNAHLS KKPAIKWNTT 120 TTKKKKTKKK KRTASVVPFA AVTNVTETCS GEVIKPQPRT LISNIQRFGP ESVDGNLRIG 180 NHDLPPSPIL TMDLQIIPIC EWDGWSPGIS SSGVNHTAEV MEGEDEFFDN FWEKLFEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-20 | 11 | 112 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FNV9 | 9e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A0K9NQ42 | 1e-176 | A0A0K9NQ42_ZOSMR; Myb-related transcription factor | ||||
STRING | Gorai.001G087400.1 | 5e-57 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-52 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Zosma79g00230.1 |
Publications ? help Back to Top | |||
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