PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma79g00140.1
Common NameZOSMA_79G00140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 366aa    MW: 40612.8 Da    PI: 6.4391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma79g00140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-174696155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  Zosma79g00140.1 46 PRYRGVRRRP-WGRFAAEIRDPL----SkERRWLGTFDTAEQAACAYDYAARAMRG 96
                     68********.**********73....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-114696IPR001471AP2/ERF domain
CDDcd000181.27E-2846106No hitNo description
PROSITE profilePS5103222.18147104IPR001471AP2/ERF domain
SMARTSM003801.0E-3147110IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2147105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-2947104IPR001471AP2/ERF domain
PRINTSPR003674.1E-94859IPR001471AP2/ERF domain
PRINTSPR003674.1E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
METTNSISTA AATARKSRRG KRSSSASSTC IPKVRCGSDE MGVEIPRYRG VRRRPWGRFA  60
AEIRDPLSKE RRWLGTFDTA EQAACAYDYA ARAMRGDKAR TNFNYATPPP PPLHPRPPTP  120
RHNQDWLWNA SSDVIPADQA TQNAPSSHSS SINAVLLRNL ISSSSHAFAV IPSNVDVSST  180
QGYATSSTTH SSNVNDVIIS PSPAITHRYS DVHGITDDLD PEDAFPLEQP PYSGLLEEIT  240
HGFFPRKEKK VEISNISSSS TTAAATNMIS CYNIPKKKAE QTLPMDGVDR RDNAGNDDDD  300
DRYHYSQPQN MRCLRQKQKQ DQVSRNVSEG DDAEDFPMLS EGLLEEIIQY PHFLEVFSYS  360
TFHDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1937103471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NNJ30.0A0A0K9NNJ3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.14e-16DORNROSCHEN-like