PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma78g00550.1 | ||||||||
Common Name | ZOSMA_78G00550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 273aa MW: 31545.1 Da PI: 8.4339 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.4e-52 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +ppGfrFhPtdeelv++yL++k++++++++ vi+e+d+y+++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ Zosma78g00550.1 8 MPPGFRFHPTDEELVNHYLCRKCTAQPITV-PVIAEIDLYRHDPWQLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGF 100 79***************************9.89***************6666689*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvfy g+apkgekt+W+mheyrl Zosma78g00550.1 101 --PKPMGIKKALVFYAGKAPKGEKTNWIMHEYRL 132 ..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.16E-61 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.693 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-28 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MSGGELQMPP GFRFHPTDEE LVNHYLCRKC TAQPITVPVI AEIDLYRHDP WQLPGMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGSGYWK ATGADKPIGF PKPMGIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLAGVDRSIR KKNSLRLDEW VLCRIYNKKG PSDKNMHRFK KKEEEIPVGL 180 PTMMPPQTQT SSEYLYNLEN SDSIPRLYTD SSCSEKFPSP CEREVQSQPT TWMQDWDNHH 240 INVVPEPEPD MMSPMLRDPF LQDILMYLQK PS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-77 | 4 | 164 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028087763.1 | 1e-124 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-116 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A0K9NQP0 | 0.0 | A0A0K9NQP0_ZOSMR; NAC domain-containing protein 2 | ||||
STRING | PGSC0003DMT400023917 | 1e-121 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-118 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma78g00550.1 |