PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma78g00190.1
Common NameZOSMA_78G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family E2F/DP
Protein Properties Length: 360aa    MW: 40031.8 Da    PI: 8.5937
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma78g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.81.6e-2798181271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+++ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Zosma78g00190.1  98 SGRGLRQFSMK---VCEKVQSkGRTTYNEVADELVAEfsnpinnvgppdqkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 181
                      689********...*****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094046.9E-1211357IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.0E-4593186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-3497181IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2599181IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.07E-20100182IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.56E-36186289IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-39187302No hitNo description
SMARTSM011381.3E-51188355IPR014889Transcription factor DP, C-terminal
PfamPF087815.1E-36189299IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDQKMENGDK KAEYSMMLAN GSSMTTAPFS AGQSPSSSGS RGSPSSRSGT ATTNPVGDNK  60
FTRLIHLDMQ GDDAASPQDT TTGRKKKRGQ RAVNGDKSGR GLRQFSMKVC EKVQSKGRTT  120
YNEVADELVA EFSNPINNVG PPDQKQQYDE KNIRRRVYDA LNVLMAMDII SKDKKEIQWR  180
GLPRTTLNDI EQLKTESIEI KNRMEKKTSY LREVEEQYNG LKNLIQRNER LYGTENAPSG  240
GVALPFILVQ TRPNATVEVE ISEDMQLVHF DFNSTPFELH DDAYVLKAIR QSEMQNSNLL  300
HDPATNLSSS AKNGENSNSI IVYENQNIQS PMFNAANNIP RSPSIPGILK ARMKNEANC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3991183190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775137.11e-157transcription factor-like protein DPB
SwissprotQ9FNY21e-131DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9NQ970.0A0A0K9NQ97_ZOSMR; Putative Transcription factor Dp-1
STRINGXP_008775137.11e-157(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP