PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma78g00060.1

Common Name

ZOSMA_78G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TCP

Protein Properties

Length: 293aa MW: 32298.6 Da PI: 7.4762

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma78g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.6	5.6e-35	71	176	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaessss 80 ++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ + + Zosma78g00060.1 71 TRKDRHSKVCTAKGPRDRRVRLSAQTAIKFYDVQDRLGYDRPSKAVDWLMKNAKTAIDQLANLppwdphkeptpaaptaD-----------VKT 153 69*************************************************************98887766333222220...........222 PP TCP 81 sasnsssg..............k 89 sa++ + + + Zosma78g00060.1 154 SADSTRDEfydsvdinnnglhaQ 176 22211111233333444444341 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.0E-32	71	174	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.087	72	130	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MNSHSQPASG SNWNLEGTQP ISNKAMGPVS QRPKQQQQQK ILRHHRESYG VGKDGGEIIA 60 VEGGHIVRSI TRKDRHSKVC TAKGPRDRRV RLSAQTAIKF YDVQDRLGYD RPSKAVDWLM 120 KNAKTAIDQL ANLPPWDPHK EPTPAAPTAD VKTSADSTRD EFYDSVDINN NGLHAQDLRL 180 SLQSFQTSAD EDQVAFFSNS SHASPLLFDA NPSLSWRNTG EEFGLIPQQQ LSYSFFPQRG 240 SLQSSDTQPN PASPVWAGFA SGGFSAGFQI PARIRGDCEE DHGPLHHHHH SC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-19	77	130	1	54	Putative transcription factor PCF6
5zkt_B	2e-19	77	130	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020252797.1	5e-52	transcription factor PCF5-like, partial
TrEMBL	A0A0K9NQK0	0.0	A0A0K9NQK0_ZOSMR; TCP family transcription factor TCP4
STRING	GSMUA_Achr5P06660_001	5e-49	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	6e-47	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	Zosma78g00060.1