PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma75g00600.1
Common NameZOSMA_75G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 422aa    MW: 45429.4 Da    PI: 6.5701
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma75g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-053183561154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Zosma75g00600.1 318 VRKEKLSDRITALQQLVSPF-----GKTDTASVLYEAIEYIKFL 356
                      578899************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.22307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-10317368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-6317357No hitNo description
Gene3DG3DSA:4.10.280.109.7E-8321357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAEEFLCTGN WWNTLRSATN SSGFDGSILP APVTPSALSC SAGINDLGYA WNQDDMSIQP  60
DRYLSTENGR IVDHHHHHPH PILQDEVSSK PYFHQEGLGG GDVVAMVEDV NQTNFIGVSY  120
DNSCTSPSIY LSLLEQDLKF QQAVAGGYVG DHNPTTTAAA AAATTTTAAT AVNYNTFNQL  180
ASGIEMDQTQ SWPAPKFPQL FKQSSQNLLF PQPKHQHQPQ QQVSQLHFSN NTAFWNAPVT  240
DTTSTTRPPV GFFSPAVAAP NQGFSQNFQP KTAVSCAGTS NNTVKDPTSS TGKKGGSSGP  300
AFKKPRVDTP SSLPAFKVRK EKLSDRITAL QQLVSPFGKT DTASVLYEAI EYIKFLHGHL  360
DVLSTPYLKN GEKSSKDGEG GKKPDLRSVG LCLVPISVTF PVANEATSDL WTAPNFGGSY  420
R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRE20.0A0A0K9NRE2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-44bHLH family protein