PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma75g00460.1
Common NameZOSMA_75G00460
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 534aa    MW: 59251.2 Da    PI: 5.5041
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma75g00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.72e-1271645322373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA+a+s++ l   + l+ + ++l+s  gdp+qRl ay+ e+L ar   s+s +y++l++ e +    +e l+ ++++++++P++kf++
  Zosma75g00460.1 164 RSLLIECARAMSEDRLDDFKMLVMQTEKLVSICGDPIQRLGAYMREGLLARQEASGSLIYRTLKCHEPE---GKELLSHMQTLYDICPYFKFGY 254
                      789*****************************************************************9...99******************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aI e+v++e+ vHiiDf+i qG+QW++L++aLa+Rp+gpp lRiTgv++p +   + + l ++g+rL+ +Ae+ ++p+ef+ l +    
  Zosma75g00460.1 255 MAANGAIAESVKNEDNVHIIDFQIAQGTQWITLIKALAARPGGPPYLRITGVDDPVNRyaRGDGLDTVGKRLKTIAEKSNIPLEFKGL-SVFGP 347
                      *******************************************************999999**************************5.88899 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s++
  Zosma75g00460.1 348 DVTREMLDIRPGEAVAVNFTLQLHHTPDESVDVSNPRDGLLRMVKGLSPKVTTLVEQESNTNTAPFFTRFTETLDYYYAMFESIDVTLPRDSKD 441
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ri+vE+ +l+++ivn++aceg++r erhe l+kW +rl++aGFkp+pls+++++ +k+ll  ++ d y++ e++g+++lgWkdr+L+s+SaW
  Zosma75g00460.1 442 RINVEQSCLAKDIVNIIACEGKDRLERHELLGKWISRLTMAGFKPLPLSSYVNSVIKSLLGCYS-DKYTLVEKDGAMLLGWKDRNLISASAW 532
                      ************************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.232137514IPR005202Transcription factor GRAS
PfamPF035147.1E-125164532IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MDRRQFYKPG VPNSMFPSAP FSEILTQPII FNIGVMPNSP HWSSRQVDGG DTISVQSDSV  60
DQQGSSEALS TLNTNSSNIA SHIDRVASGF SQSEMSALQE LENLLMAPDI EEDAATSSYA  120
DLSHGMDDNR QSDFVSRKCQ KLSHQSCPKA IQHIFKNSGD GGVRSLLIEC ARAMSEDRLD  180
DFKMLVMQTE KLVSICGDPI QRLGAYMREG LLARQEASGS LIYRTLKCHE PEGKELLSHM  240
QTLYDICPYF KFGYMAANGA IAESVKNEDN VHIIDFQIAQ GTQWITLIKA LAARPGGPPY  300
LRITGVDDPV NRYARGDGLD TVGKRLKTIA EKSNIPLEFK GLSVFGPDVT REMLDIRPGE  360
AVAVNFTLQL HHTPDESVDV SNPRDGLLRM VKGLSPKVTT LVEQESNTNT APFFTRFTET  420
LDYYYAMFES IDVTLPRDSK DRINVEQSCL AKDIVNIIAC EGKDRLERHE LLGKWISRLT  480
MAGFKPLPLS SYVNSVIKSL LGCYSDKYTL VEKDGAMLLG WKDRNLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6516953225378Protein SCARECROW
5b3h_A2e-6516953224377Protein SCARECROW
5b3h_D2e-6516953224377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010923996.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0K9NPU90.0A0A0K9NPU9_ZOSMR; Chitin-inducible gibberellin-responsive protein 1
STRINGXP_008797425.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-171GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]